Protein: ENSP00000349961
Gene: SMC4

LinkedOmicsKB © 2022-2023 Zhang Lab

SMC4:
structural maintenance of chromosomes 4

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S22EEGPPPPSPDGASSD830215---191717-536053--1443716357
S27PPSPDGASSDAEPEP1024224-12129918-452798232072647-
S28PSPDGASSDAEPEPP1090847-5441727190-633669622725641274325415
T39PEPPSGRTESPATAA220------------54--83--
S41PPSGRTESPATAAET10132383-9975848680-108541065010085691681369516
T44GRTESPATAAETASE199-------------------
S50ATAAETASEELDNRS4137--------5425134440----6-
S109GPFHKRFSCIIGPNG19------------54------
S143KIRSKKLSVLIHNSD118------18-------------
T739DRRWRVVTLQGQIIE117------------98------
Showing 1 to 10 of 12 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S22EEGPPPPSPDGASSD7.3e-4-----1.4e-14---3.5e-3-
S27PPSPDGASSDAEPEP9.8e-4----0.018-0.022---
S28PSPDGASSDAEPEPP2.6e-21-1.2e-52.8e-9-1.3e-64.7e-99.6e-11-0.2-6.5e-54.1e-6
T39PEPPSGRTESPATAA-----------
S41PPSGRTESPATAAET5.2e-6-0.026-0.27-1.2e-55.5e-95.1e-5-0.046-0.0120.045
T44GRTESPATAAETASE-----------
S50ATAAETASEELDNRS5.4e-12-----1.4e-77.4e-6---
S109GPFHKRFSCIIGPNG-----------
S143KIRSKKLSVLIHNSD-----------
T739DRRWRVVTLQGQIIE-----------
Showing 1 to 10 of 12 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationCCRCCS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationCOADS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationGBMS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationHNSCCS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationLSCCS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationLUADS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationOVS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationPDACS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylationUCECS22S27S28T39S41T44S50S109S143T739S1056S1166proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.