NF1:
neurofibromin 1

Lollipop plot

Phosphosites location and occurrence

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Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S465PAIRMAPSLTFKEKV851346-1816--64-53--8781411054225511
S620KNKQADRSSCHFLLF19------9-------------
T653DHEELLRTPGASLRK152--------------4210----
S657LLRTPGASLRKGKGN19------9-------------
S666RKGKGNSSMDSAAGC346------28---54-------9
S856GVCLQQRSNSGLATY110------10-------------
S858CLQQRSNSGLATYSP113------------------112
Y863SNSGLATYSPPMGPV4298-54------------3252
S864NSGLATYSPPMGPVS101219105-7957725499-713979748881681787369518
S876PVSERKGSMISVMSS1075673-2719242181-291735335653751859239518
Showing 1 to 10 of 39 rows
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Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S465PAIRMAPSLTFKEKV0.058------0.13-0.74.3e-6-0.056
S620KNKQADRSSCHFLLF-----------
T653DHEELLRTPGASLRK-0.17--------0.17--
S657LLRTPGASLRKGKGN-----------
S666RKGKGNSSMDSAAGC-----------
S856GVCLQQRSNSGLATY-----------
S858CLQQRSNSGLATYSP-----------
Y863SNSGLATYSPPMGPV-----------
S864NSGLATYSPPMGPVS2.9e-3-0.016-0.29-0.0561.6e-33.7e-4-0.12-0.0720.078
S876PVSERKGSMISVMSS0.1-0.022-4.6e-3-10.93-0.570.0110.0240.58
Showing 1 to 10 of 39 rows
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* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationCCRCCS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationCOADS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationGBMS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationHNSCCS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationLSCCS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationLUADS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationOVS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationPDACS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylationUCECS465S620T653S657S666S856S858Y863S864S876S879S882S883S1164Y1169T1980T1982S2188S2460S2467S2495S2496S2500T2510T2514S2515S2521S2523S2543T2564T2565S2597S2599S2601S2802S2810S2817S2826S2829proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.