NUP98: nucleoporin 98 and 96 precursor
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1ko6 chain A
1ko6 chain B
1ko6 chain C
1ko6 chain D
2q5x chain A
2q5y chain A
2q5y chain B
2q5y chain C
2q5y chain D
3mmy chain B
3mmy chain D
3mmy chain F
3mmy chain H
4owr chain B
5a9q chain 5
5a9q chain E
5a9q chain N
5a9q chain W
6bzm chain A
6bzm chain B
7peq chain AE
7peq chain BE
7peq chain CE
7peq chain DE
7r5k chain M0
7r5k chain M1
7r5k chain M2
7r5k chain M3
7r5k chain U0
7r5k chain U1
7r5k chain U2
7r5k chain U3
7r5k chain U4
7r5k chain U5
7r5k chain U6
7vpg chain B
7vpg chain D
7vpg chain F
7vpg chain H
7vph chain B
7vph chain D
7vph chain F
7vph chain H
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S230 TTTGLFGS SPATSSA 1 9 - - - - - - 9 - - - - - - - - - - - - - S231 TTGLFGSS PATSSAT 3 88 - - - - - - 27 - 6 4 - - - - - - - - 36 15 T238 SPATSSAT GLFSSST 1 18 - - - - - - - - 12 6 - - - - - - - - - - S242 SSATGLFS SSTTNSG 2 16 8 - - - - - - - - - - - 4 4 - - - - - - S524 PLFRNPMS DPKKKEE 10 836 96 - 20 20 42 39 63 - 108 62 93 87 14 12 14 3 48 16 81 18 T546 AAQKALTT PTHYKLT 10 1159 96 - 28 25 81 72 82 - 64 37 108 99 69 64 83 19 95 41 83 13 T553 TPTHYKLT PRPATRV 6 169 9 - - - - - 45 - 5 4 28 25 - - 7 2 - - 31 13 S608 VLKNLNNS NLFSPVN 10 498 52 - 32 21 26 28 18 - 32 21 20 18 36 31 28 6 15 5 91 18 S612 LNNSNLFS PVNRDSE 10 1544 122 - 103 80 97 100 90 - 108 62 108 99 110 101 83 19 105 44 95 18 S618 FSPVNRDS ENLASPS 9 314 9 - 22 20 10 8 90 - 11 8 40 36 14 12 - - 17 9 8 -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S230 TTTGLFGS SPATSSA - - - - - - - - - - - S231 TTGLFGSS PATSSAT 0.42 - - - - - - - - - 0.42 T238 SPATSSAT GLFSSST - - - - - - - - - - - S242 SSATGLFS SSTTNSG - - - - - - - - - - - S524 PLFRNPMS DPKKKEE 1.6e-19 - -3.2e-3 2.7e-4 - 1e-11 3.9e-29 - - 0.027 0.22 T546 AAQKALTT PTHYKLT 3.5e-43 - 0.99 5.1e-25 - 2.2e-11 2.7e-17 8.2e-5 1.8e-4 1.9e-3 0.007 T553 TPTHYKLT PRPATRV 1.5e-14 - - - - - 3.2e-10 - - - 4.4e-6 S608 VLKNLNNS NLFSPVN 1.3e-7 - -0.94 8.7e-5 - -0.37 4.1e-8 0.3 - - 5.6e-4 S612 LNNSNLFS PVNRDSE 2e-14 - 2.7e-3 6e-10 - 0.13 0.067 0.059 0.64 7.8e-9 0.33 S618 FSPVNRDS ENLASPS 0.017 - 0.14 - - - 0.059 - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S230
S231
T238
S242
S524
T546
T553
S608
S612
S618
S623
S625
Y627
S635
S653
S656
Y659
T660
T670
S673
S679
S681
S683
T687
S704
S705
S709
S714
S726
Y727
S746
S839
S872
S888
S900
T915
T916
S932
S934
T1000
S1014
S1018
T1022
S1023
S1028
S1034
S1038
S1039
S1043
S1055
S1060
S1062
S1064
T1070
S1075
S1086
T1096
S1099
S1311
T1313
S1329
S1447
S1465
T1772
Y1796
S1803
S1816
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation CCRCC S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation COAD S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation GBM S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation HNSCC S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation LSCC S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation LUAD S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation OV S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation PDAC S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation UCEC S230 S231 T238 S242 S524 T546 T553 S608 S612 S618 S623 S625 Y627 S635 S653 S656 Y659 T660 T670 S673 S679 S681 S683 T687 S704 S705 S709 S714 S726 Y727 S746 S839 S872 S888 S900 T915 T916 S932 S934 T1000 S1014 S1018 T1022 S1023 S1028 S1034 S1038 S1039 S1043 S1055 S1060 S1062 S1064 T1070 S1075 S1086 T1096 S1099 S1311 T1313 S1329 S1447 S1465 T1772 Y1796 S1803 S1816 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S230
S231
T238
S242
S524
T546
T553
S608
S612
S618
S623
S625
Y627
S635
S653
S656
Y659
T660
T670
S673
S679
S681
S683
T687
S704
S705
S709
S714
S726
Y727
S746
S839
S872
S888
S900
T915
T916
S932
S934
T1000
S1014
S1018
T1022
S1023
S1028
S1034
S1038
S1039
S1043
S1055
S1060
S1062
S1064
T1070
S1075
S1086
T1096
S1099
S1311
T1313
S1329
S1447
S1465
T1772
Y1796
S1803
S1816
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S230
S231
T238
S242
S524
T546
T553
S608
S612
S618
S623
S625
Y627
S635
S653
S656
Y659
T660
T670
S673
S679
S681
S683
T687
S704
S705
S709
S714
S726
Y727
S746
S839
S872
S888
S900
T915
T916
S932
S934
T1000
S1014
S1018
T1022
S1023
S1028
S1034
S1038
S1039
S1043
S1055
S1060
S1062
S1064
T1070
S1075
S1086
T1096
S1099
S1311
T1313
S1329
S1447
S1465
T1772
Y1796
S1803
S1816
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.