ETF1: eukaryotic translation termination factor 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1dt9 chain A
2hst chain A
2ktu chain A
2ktv chain A
2lgt chain A
2llx chain A
2mq6 chain A
2mq9 chain A
3e1y chain A
3e1y chain B
3e1y chain C
3e1y chain D
3j5y chain A
3jag chain ii
3jah chain ii
3jai chain ii
4d5n chain A
4d61 chain h
5a8l chain Q
5lzt chain ii
5lzu chain ii
5lzv chain ii
6d90 chain jj
6ip8 chain zw
6xa1 chain j
6zme chain CH
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S70 KSRVNRLS VLGAITS 5 115 16 - 4 4 - - 18 - - - 24 22 - - - - - - 25 2
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S70 KSRVNRLS VLGAITS -0.057 - - - - - -0.057 - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S70
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S70 protein RNA SCNV methylation CCRCC S70 protein RNA SCNV methylation COAD S70 protein RNA SCNV methylation GBM S70 protein RNA SCNV methylation HNSCC S70 protein RNA SCNV methylation LSCC S70 protein RNA SCNV methylation LUAD S70 protein RNA SCNV methylation OV S70 protein RNA SCNV methylation PDAC S70 protein RNA SCNV methylation UCEC S70 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S70
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S70
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.