NUCKS1: nuclear casein kinase and cyclin dependent kinase substrate 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
Y13 RNRKVVDY SQFQESD 2 27 - - - - - - - - - - - - - - - - 11 7 - 9 S14 NRKVVDYS QFQESDD 9 374 46 - 29 27 - - 37 - 5 3 43 41 15 12 15 2 11 7 66 15 S19 DYSQFQES DDADEDY 10 1553 122 - 103 80 97 100 99 - 108 62 108 99 110 101 83 19 105 44 95 18 Y26 SDDADEDY GRDSGPP 8 230 9 - 53 34 8 9 9 - 12 7 10 8 28 24 - - 14 5 - - S30 DEDYGRDS GPPTKKI 7 322 - - - - - - 27 - 10 8 35 31 39 38 14 3 72 30 13 2 T34 GRDSGPPT KKIRSSP 2 17 - - - - - - - - - - 5 4 - - - - - - 5 3 S39 PPTKKIRS SPREAKN 8 350 71 - 12 12 - - 26 - 6 3 69 64 12 12 - - 39 15 - 9 S40 PTKKIRSS PREAKNK 8 220 89 - 12 12 - - 26 - 6 3 14 12 4 3 - - 6 3 28 2 S50 EAKNKRRS GKNSQED 3 60 13 - - - 5 4 - - - - 20 18 - - - - - - - - S54 KRRSGKNS QEDSEDS 10 1269 96 - 82 62 88 91 99 - 55 35 79 74 84 76 75 17 101 42 95 18
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Y13 RNRKVVDY SQFQESD - - - - - - - - - - - S14 NRKVVDYS QFQESDD 0.015 - 0.16 - - - 2.0e-5 - - - -0.15 S19 DYSQFQES DDADEDY -4.1e-15 - -0.014 -1.4e-5 - -0.39 -7e-17 -1.7e-7 0.61 6.2e-4 -9.2e-7 Y26 SDDADEDY GRDSGPP -6.8e-3 - 0.89 - - - - -7.4e-5 - - - S30 DEDYGRDS GPPTKKI -7.8e-5 - - - - - -2e-7 -7.9e-5 - 0.021 - T34 GRDSGPPT KKIRSSP - - - - - - - - - - - S39 PPTKKIRS SPREAKN 1.5e-8 - - - - - 3.1e-19 - - -0.34 - S40 PTKKIRSS PREAKNK - - - - - - - - - - - S50 EAKNKRRS GKNSQED 0.072 - - - - - 0.072 - - - - S54 KRRSGKNS QEDSEDS -3.9e-3 - -2.7e-3 0.049 - -0.019 -0.75 0.97 0.95 -1.2e-7 0.46
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
Y13
S14
S19
Y26
S30
T34
S39
S40
S50
S54
S58
S61
S73
S75
S79
S113
S130
S132
S144
T179
S181
T193
S195
S198
T202
S204
S214
T220
S221
T222
S223
S229
S234
S240
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation CCRCC Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation COAD Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation GBM Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation HNSCC Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation LSCC Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation LUAD Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation OV Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation PDAC Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation UCEC Y13 S14 S19 Y26 S30 T34 S39 S40 S50 S54 S58 S61 S73 S75 S79 S113 S130 S132 S144 T179 S181 T193 S195 S198 T202 S204 S214 T220 S221 T222 S223 S229 S234 S240 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
Y13
S14
S19
Y26
S30
T34
S39
S40
S50
S54
S58
S61
S73
S75
S79
S113
S130
S132
S144
T179
S181
T193
S195
S198
T202
S204
S214
T220
S221
T222
S223
S229
S234
S240
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
Y13
S14
S19
Y26
S30
T34
S39
S40
S50
S54
S58
S61
S73
S75
S79
S113
S130
S132
S144
T179
S181
T193
S195
S198
T202
S204
S214
T220
S221
T222
S223
S229
S234
S240
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.