Protein: ENSP00000356146
Gene: SCAF8

LinkedOmicsKB © 2022-2023 Zhang Lab

SCAF8:
SR-related CTD associated factor 8

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S273RFDFGEDSEHSEEPK1056814-52334527-17117873635718648222812
S276FGEDSEHSEEPKKEI16------------------6-
S398AKKVAVRSRSRTHSR18----------------53--
S400KVAVRSRSRTHSRSR18----------------53--
S445RKRKSSRSYSSERRA214--54------------32--
Y446KRKSSRSYSSERRAR19--54----------------
S447RKSSRSYSSERRARE5146------9-63----3393312392
S617ETVQTTQSPTPVEKE101531122-103809710090-1086210899106978319101439518
S779HLIDHQISSGENTRS1085366-4831363537-9250544888801337230664
S1243LYEKLTSSNEINKEK15----------------41--
Showing 1 to 10 of 11 rows
1025
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Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S273RFDFGEDSEHSEEPK-5.3e-3--0.44---0.550.35--2.7e-6-0.021
S276FGEDSEHSEEPKKEI-----------
S398AKKVAVRSRSRTHSR-----------
S400KVAVRSRSRTHSRSR-----------
S445RKRKSSRSYSSERRA-----------
Y446KRKSSRSYSSERRAR-----------
S447RKSSRSYSSERRARE1.2e-3--------1.2e-3-
S617ETVQTTQSPTPVEKE3.7e-9--1.9e-135.3e-18-3.0e-56.3e-221.6e-140.2-1.6e-11-0.52
S779HLIDHQISSGENTRS2.2e-7-0.28-0.46-4.3e-101.5e-3-0.12-7.6e-6-
S1243LYEKLTSSNEINKEK-----------
Showing 1 to 10 of 11 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationCCRCCS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationCOADS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationGBMS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationHNSCCS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationLSCCS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationLUADS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationOVS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationPDACS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylationUCECS273S276S398S400S445Y446S447S617S779S1243T1268proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.