PRPF38B:
pre-mRNA processing factor 38B

Lollipop plot

Phosphosites location and occurrence

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Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S5___MANNSPALTGNS6336------62-311759502723--1253515
T9ANNSPALTGNSQPQH595--124----63--1212--196129
S12SPALTGNSQPQHQAA457--124--------44--13569
S266RSRSPRRSLSPRRSP5215----121528---35341815----499
S268RSPRRSLSPRRSPRR6508----252928---69644035--81368318
S272RSLSPRRSPRRSRSR6508----252928---69644035--81368318
S288HHREGHGSSSFDREL6148----17199---101088508--72
S289HREGHGSSSFDRELE5112------9---109445513--53
S290REGHGSSSFDRELER91007--449710099-1086263579888831842165513
S318REKERRRSRSIDRGL81034--91683699-1035993869284--105448318
Showing 1 to 10 of 21 rows
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S5___MANNSPALTGNS4.2e-20----9.9e-32.2e-111.6e-8--5.7e-4
T9ANNSPALTGNSQPQH-----------
S12SPALTGNSQPQHQAA-----------
S266RSRSPRRSLSPRRSP7.3e-9-----7.3e-9----
S268RSPRRSLSPRRSPRR6.1e-16--5.9e-4--3.8e-142.3e-4--0.265.9e-6
S272RSLSPRRSPRRSRSR6.1e-16--5.9e-4--3.8e-142.3e-4--0.265.9e-6
S288HHREGHGSSSFDREL-----------
S289HREGHGSSSFDRELE8.8e-6-------8.8e-6--
S290REGHGSSSFDRELER1.6e-22--1.8e-17-4.3e-60.0129.7e-132.4e-5-1.7e-30.048
S318REKERRRSRSIDRGL5.2e-8--0.053--3e-181.1e-52.8e-13--7.2e-4-0.08
Showing 1 to 10 of 21 rows
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationCCRCCS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationCOADS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationGBMS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationHNSCCS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationLSCCS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationLUADS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationOVS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationPDACS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylationUCECS5T9S12S266S268S272S288S289S290S318S320S394S471S473S475T479S481S491S527S529S534proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.