GRIN1: glutamate ionotropic receptor NMDA type subunit 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
2nr1 chain A
3bya chain B
5h8f chain B
5h8h chain B
5h8n chain B
5h8q chain B
5i2k chain B
5i2n chain B
5kcj chain B
5kdt chain B
5tp9 chain B
5tpa chain B
6ira chain A
6ira chain C
6irf chain A
6irf chain C
6irg chain A
6irg chain C
6irh chain A
6irh chain C
7eoq chain B
7eoq chain D
7eor chain B
7eor chain D
7eos chain B
7eos chain D
7eot chain B
7eot chain D
7eou chain B
7eou chain D
7eu7 chain A
7eu7 chain C
7eu8 chain A
7eu8 chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S890 ITSTLASS FKRRRSS 1 90 - - - - - - 90 - - - - - - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S890 ITSTLASS FKRRRSS - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S890
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S890 protein RNA SCNV methylation CCRCC S890 protein RNA SCNV methylation COAD S890 protein RNA SCNV methylation GBM S890 protein RNA SCNV methylation HNSCC S890 protein RNA SCNV methylation LSCC S890 protein RNA SCNV methylation LUAD S890 protein RNA SCNV methylation OV S890 protein RNA SCNV methylation PDAC S890 protein RNA SCNV methylation UCEC S890 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S890
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S890
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.