Protein: ENSP00000369218
Gene: RBM17

LinkedOmicsKB © 2022-2023 Zhang Lab

RBM17:
RNA binding motif protein 17

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

Loading, please wait
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T49SQRTKQSTVLAPVID11717-------------------
S62IDLKRGGSSDDRQIV3296---------------52133
S63DLKRGGSSDDRQIVD32714---------------526-
T71DDRQIVDTPPHVAAG101501122-10380827199-10862108991101017717105449518
S155ARRPDPDSDEDEDYE101529122-103809710099-1086210899106977417105449018
S169ERERRKRSMGGAAIA101389122-6966455499-10458103941101018319105449518
Y214AAIPPPVYEEQDRPR217------9-----44------
S222EEQDRPRSPTGPSNS101536122-94729710099-10862108991101018319105449518
T224QDRPRSPTGPSNSFL1048232-7553211527-643954393562198299
S227PRSPTGPSNSFLANM1035547-3127171018-29131917292462229305
Showing 1 to 10 of 13 rows
1025
rows per page

Tumor and normal comparison

Loading, please wait
Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T49SQRTKQSTVLAPVID-----------
S62IDLKRGGSSDDRQIV-----------
S63DLKRGGSSDDRQIVD-----------
T71DDRQIVDTPPHVAAG2.5e-29-0.730.046-8.7e-132.9e-251.7e-206.9e-3-0.0670.077
S155ARRPDPDSDEDEDYE1.5e-22-0.0288.8e-21-1.5e-125.8e-285.3e-5-0.89-2.3e-120.24
S169ERERRKRSMGGAAIA-1.3e-4-4.9e-16-3.0e-5-0.53-1.0e-40.71-4.4e-3-3.7e-8-4.5e-4
Y214AAIPPPVYEEQDRPR-----------
S222EEQDRPRSPTGPSNS1.2e-44--0.652e-19-5.2e-51.9e-161.7e-192.3e-30.271.7e-8
T224QDRPRSPTGPSNSFL1.7e-5--0.774.7e-3-0.005-0.001---
S227PRSPTGPSNSFLANM2.3e-5-0.65--6.8e-7-0.054---
Showing 1 to 10 of 13 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

Loading, please wait
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationCCRCCT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationCOADT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationGBMT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationHNSCCT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationLSCCT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationLUADT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationOVT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationPDACT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylationUCECT49S62S63T71S155S169Y214S222T224S227S229S266S293proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

Loading, please wait
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

Loading, please wait
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.