Protein: ENSP00000369857
Gene: ABRAXAS1

LinkedOmicsKB © 2022-2023 Zhang Lab

ABRAXAS1:
abraxas 1, BRCA1 A complex subunit

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S48AKNSITDSQMDDVEV311973---------151498------
S336HTDIPEASPASTPQI4538---5418-117----------
T340PEASPASTPQIIKHK18--------44----------
S386QDKASKMSSPETDEE91104105-7764566062-522910899110101--10544293
S387DKASKMSSPETDEEI93326-8810818-64201988--68289518
T390SKMSSPETDEEIEKM956822-7157343772-5334322122--10041134
S406GFGEYSRSPTF____104898-8812699-28169988481170289518
Showing 1 to 7 of 7 rows

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S48AKNSITDSQMDDVEV-----------
S336HTDIPEASPASTPQI-----------
T340PEASPASTPQIIKHK-----------
S386QDKASKMSSPETDEE2.2e-11--1.9e-31.5e-5-0.0528.6e-268.1e-22--6e-12-
S387DKASKMSSPETDEEI0.022-----2.2e-6---4.3e-30.035
T390SKMSSPETDEEIEKM-4.3e-12--0.0271.6e-3---1.3e-8-5.5e-4--2.9e-13-
S406GFGEYSRSPTF____9.2e-5----0.016--0.11.5e-7-0.14
Showing 1 to 7 of 7 rows

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS48S336T340S386S387T390S406proteinRNASCNVmethylationCCRCCS48S336T340S386S387T390S406proteinRNASCNVmethylationCOADS48S336T340S386S387T390S406proteinRNASCNVmethylationGBMS48S336T340S386S387T390S406proteinRNASCNVmethylationHNSCCS48S336T340S386S387T390S406proteinRNASCNVmethylationLSCCS48S336T340S386S387T390S406proteinRNASCNVmethylationLUADS48S336T340S386S387T390S406proteinRNASCNVmethylationOVS48S336T340S386S387T390S406proteinRNASCNVmethylationPDACS48S336T340S386S387T390S406proteinRNASCNVmethylationUCECS48S336T340S386S387T390S406proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.