NOP56: NOP56 ribonucleoprotein
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
7mq8 chain SA
7mq9 chain SA
7mqa chain SA
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
Loading, please wait
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S57 AFCPFASS QVALENA 1 9 - - 5 4 - - - - - - - - - - - - - - - - S86 LLETHLPS KKKKVLL 3 57 32 - 8 8 - - - - - - - - - - - - - - 7 2 S153 LGLGHSYS RAKVKFN 1 6 - - - - - - - - - - - - - - - - - - 6 - S314 RLIAHAGS LTNLAKY 8 229 29 - 20 19 - - - - 55 32 5 5 8 7 14 4 12 5 14 - S461 LAALALAS SENSSST 1 8 - - 4 4 - - - - - - - - - - - - - - - - S462 AALALASS ENSSSTP 4 35 8 - 4 4 - - - - 6 4 - - - - - - - - - 9 S465 ALASSENS SSTPEEC 2 14 - - 4 4 - - - - - - - - - - - - - - 6 - S466 LASSENSS STPEECE 10 317 23 - 19 11 56 51 26 - 5 2 15 12 9 8 6 2 9 5 42 16 S467 ASSENSSS TPEECEE 8 442 7 - 72 57 29 33 9 - 13 5 68 64 40 37 - - - - 6 2 T468 SSENSSST PEECEEM 10 280 7 - 4 4 30 24 26 - 6 3 15 14 35 33 7 - 10 5 42 15
Tumor and normal comparison
Loading, please wait
Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S57 AFCPFASS QVALENA - - - - - - - - - - - S86 LLETHLPS KKKKVLL - - - - - - - - - - - S153 LGLGHSYS RAKVKFN - - - - - - - - - - - S314 RLIAHAGS LTNLAKY -0.61 - -0.86 - - -0.59 - - - - - S461 LAALALAS SENSSST - - - - - - - - - - - S462 AALALASS ENSSSTP - - - - - - - - - - - S465 ALASSENS SSTPEEC - - - - - - - - - - - S466 LASSENSS STPEECE 0.017 - - 0.034 - - - - - - 0.22 S467 ASSENSSS TPEECEE 4e-21 - 0.043 1.2e-4 - - 2.6e-16 1.5e-6 - - - T468 SSENSSST PEECEEM 1.4e-4 - - 0.17 - - - 4.5e-6 - - 0.51
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
Loading, please wait
all sites
S57
S86
S153
S314
S461
S462
S465
S466
S467
T468
S502
S511
S513
S519
S520
T525
S537
T538
S554
S556
S563
S569
S570
S579
S580
S591
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation CCRCC S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation COAD S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation GBM S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation HNSCC S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation LSCC S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation LUAD S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation OV S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation PDAC S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation UCEC S57 S86 S153 S314 S461 S462 S465 S466 S467 T468 S502 S511 S513 S519 S520 T525 S537 T538 S554 S556 S563 S569 S570 S579 S580 S591 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S57
S86
S153
S314
S461
S462
S465
S466
S467
T468
S502
S511
S513
S519
S520
T525
S537
T538
S554
S556
S563
S569
S570
S579
S580
S591
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S57
S86
S153
S314
S461
S462
S465
S466
S467
T468
S502
S511
S513
S519
S520
T525
S537
T538
S554
S556
S563
S569
S570
S579
S580
S591
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.