RPL34: ribosomal protein L34
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
4ug0 chain Lg
4v6x chain Cg
5aj0 chain Ag
5lks chain Lg
5t2c chain a
6ip5 chain 2a
6ip6 chain 2a
6ip8 chain 2a
6lqm chain F
6lsr chain F
6lss chain F
6lu8 chain F
6mtd chain g
6mte chain g
6ole chain h
6olf chain h
6olg chain Ag
6oli chain h
6olz chain Ag
6om0 chain h
6om7 chain h
6qzp chain Lg
6w6l chain h
6xa1 chain Lg
6y0g chain Lg
6y2l chain Lg
6y57 chain Lg
6y6x chain Lg
6z6l chain Lg
6z6m chain Lg
6z6n chain Lg
6zm7 chain Lg
6zme chain Lg
6zmi chain Lg
6zmo chain Lg
7bhp chain Lg
7f5s chain Lg
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S12 LTYRRRLS YNTASNK 10 1067 64 - 42 21 78 74 90 - 103 59 49 46 40 37 83 19 105 44 95 18 S17 RLSYNTAS NKTRLSR 2 24 - - - - - - - - 11 6 - - - - - - 5 2 - - S81 VSRAYGGS MCAKCVR 2 19 - - - - - - - - 7 3 - - 5 4 - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S12 LTYRRRLS YNTASNK 0.43 - 1.7e-12 2.5e-7 - 0.5 -0.48 0.24 -0.34 -9.1e-13 -2.4e-3 S17 RLSYNTAS NKTRLSR - - - - - - - - - - - S81 VSRAYGGS MCAKCVR - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S12
S17
S81
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S12 S17 S81 protein RNA SCNV methylation CCRCC S12 S17 S81 protein RNA SCNV methylation COAD S12 S17 S81 protein RNA SCNV methylation GBM S12 S17 S81 protein RNA SCNV methylation HNSCC S12 S17 S81 protein RNA SCNV methylation LSCC S12 S17 S81 protein RNA SCNV methylation LUAD S12 S17 S81 protein RNA SCNV methylation OV S12 S17 S81 protein RNA SCNV methylation PDAC S12 S17 S81 protein RNA SCNV methylation UCEC S12 S17 S81 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S12
S17
S81
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S12
S17
S81
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.