Protein: ENSP00000379392
Gene: THUMPD1

LinkedOmicsKB © 2022-2023 Zhang Lab

THUMPD1:
THUMP domain containing 1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T8MAAPAQQTTQPGGGK116------------88------
T9AAPAQQTTQPGGGKR116------------88------
S86TDKDQQPSGSEGEDD1073272-1212645399-63544743404694919959
S88KDQQPSGSEGEDDDA101235122-8767909880-1035860565952601589378418
S109EVGDIKASTEMRLRR3638---------1513------252
S119MRLRRFQSVESGANN9799104-6554--72-241994867064314938218
S270NLQEVVKSPKDPSQL736089---1413----4542322828641175-
S275VKSPKDPSQLNSKQG2179-----------44------
S295KLESADKSDQNNTAE830424-1816--9-2215252298--2998018
T300DKSDQNNTAEGKNNQ199-------------------
Showing 1 to 10 of 13 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T8MAAPAQQTTQPGGGK-----------
T9AAPAQQTTQPGGGKR-----------
S86TDKDQQPSGSEGEDD3.5e-19--1.9e-9--1.1e-73.5e-3-2.6e-4-
S88KDQQPSGSEGEDDDA1.4e-25--1.2e-114.7e-18-1.3e-101.5e-134.6e-120.0140.191.3e-3
S109EVGDIKASTEMRLRR-----------
S119MRLRRFQSVESGANN-4.8e-12-0.032---0.002-1.3e-14-2.5e-3---1.6e-4
S270NLQEVVKSPKDPSQL2.7e-4------0.83.0e-4-3.2e-3-
S275VKSPKDPSQLNSKQG-----------
S295KLESADKSDQNNTAE-0.073----0.3-0.19----4.6e-3
T300DKSDQNNTAEGKNNQ-----------
Showing 1 to 10 of 13 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationCCRCCT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationCOADT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationGBMT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationHNSCCT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationLSCCT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationLUADT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationOVT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationPDACT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylationUCECT8T9S86S88S109S119S270S275S295T300T322S323S353proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.