Protein: ENSP00000383700
Gene: RERE

LinkedOmicsKB © 2022-2023 Zhang Lab

RERE:
arginine-glutamic acid dipeptide repeats

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S40ENSRPRRSCTLEGGA1073962-549927-60368477736620562279518
T42SRPRRSCTLEGGAKN61678-----9---35325472--596
S53GAKNYAESDHSEDED106568-4626847799-1165558547139179518
S56NYAESDHSEDEDNDN1048533-8-5481-2313585069597174549
S65DEDNDNNSATAEEST61379-44--18---5544----6618
T67DNDNNSATAEESTKK19----------54--------
T120IESRRPNTPYFICSI577------36-5355--72--113
S142NSQACCRSPTPALCD626823---242145-----2219628--377
T144QACCRSPTPALCDPP215------9-------51----
S304PDLQPFPSPDGDTVT18------8-------------
Showing 1 to 10 of 41 rows
102550
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S40ENSRPRRSCTLEGGA-0.015----0.25-7.5e-30.036--2.1e-5-0.076
T42SRPRRSCTLEGGAKN0.012-----0.012----
S53GAKNYAESDHSEDED7.1e-12--1.9e-65.7e-18---2e-13-0.0270.057
S56NYAESDHSEDEDNDN3.2e-19----0.0116.8e-101e-11---
S65DEDNDNNSATAEEST0.12---------0.12
T67DNDNNSATAEESTKK-----------
T120IESRRPNTPYFICSI-----------
S142NSQACCRSPTPALCD-0.29---0.48----0.43---
T144QACCRSPTPALCDPP-----------
S304PDLQPFPSPDGDTVT-----------
Showing 1 to 10 of 41 rows
102550
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationCCRCCS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationCOADS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationGBMS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationHNSCCS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationLSCCS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationLUADS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationOVS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationPDACS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylationUCECS40T42S53S56S65T67T120S142T144S304S486S487S489S580S594T599S600S609S613S618T619S620S641S642S656T658S665T671S675S679S681S687S688S690S692S699S1106S1113S1115S1266S1408proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.