IDH1: isocitrate dehydrogenase (NADP(+)) 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1t09 chain A
1t09 chain B
1t0l chain A
1t0l chain B
1t0l chain C
1t0l chain D
3inm chain A
3inm chain B
3inm chain C
3map chain A
3map chain B
3mar chain A
3mar chain B
3mas chain A
3mas chain B
4i3k chain A
4i3k chain B
4i3l chain A
4i3l chain B
4kzo chain A
4kzo chain B
4kzo chain C
4l03 chain A
4l03 chain B
4l03 chain C
4l04 chain A
4l04 chain B
4l04 chain C
4l04 chain D
4l04 chain E
4l04 chain F
4l06 chain A
4l06 chain B
4l06 chain C
4l06 chain D
4l06 chain E
4l06 chain F
4umx chain A
4umx chain B
4umy chain A
4umy chain B
4xrx chain A
4xrx chain B
4xs3 chain A
4xs3 chain B
5de1 chain A
5de1 chain B
5gir chain C
5gir chain D
5k10 chain A
5k10 chain B
5k11 chain A
5k11 chain B
5l57 chain A
5l58 chain A
5lge chain A
5lge chain B
5lge chain C
5lge chain D
5sun chain A
5sun chain B
5svf chain A
5svf chain B
5svf chain C
5svf chain D
5tqh chain A
5tqh chain B
5tqh chain C
5tqh chain D
5yfm chain A
5yfm chain B
5yfm chain C
5yfn chain A
5yfn chain B
6adg chain A
6adg chain B
6adg chain C
6b0z chain A
6b0z chain B
6b0z chain C
6b0z chain D
6bkx chain A
6bkx chain B
6bkx chain C
6bky chain A
6bky chain B
6bky chain C
6bky chain D
6bky chain E
6bky chain F
6bkz chain A
6bkz chain B
6bl0 chain A
6bl0 chain B
6bl0 chain C
6bl1 chain A
6bl1 chain B
6bl1 chain C
6bl2 chain A
6bl2 chain B
6bl2 chain C
6io0 chain A
6io0 chain B
6o2y chain A
6o2y chain B
6o2y chain C
6o2z chain A
6o2z chain B
6pay chain A
6pay chain B
6pay chain C
6pay chain D
6q6f chain A
6q6f chain B
6u4j chain A
6u4j chain B
6vei chain A
6vei chain B
6vg0 chain A
6vg0 chain B
6vg0 chain C
7pjm chain A
7pjm chain B
7pjm chain C
7pjn chain A
7pjn chain B
7pjn chain C
7pjn chain D
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S9 SKKISGGS VVEMQGD 1 13 - - - - - - - - - - - - - - - - - - 11 2 T77 GVKCATIT PDEKRVE 7 303 62 - - - - - 28 - 5 3 45 42 18 16 - - 5 1 72 6 S94 KLKQMWKS PNGTIRN 2 113 104 - - - 4 5 - - - - - - - - - - - - - - S122 KNIPRLVS GWVKPII 2 14 - - 4 4 - - - - - - - - - - - - - - 6 - T157 GKVEITYT PSDGTQK 1 7 - - 4 3 - - - - - - - - - - - - - - - - S159 VEITYTPS DGTQKVT 1 6 - - - - - - - - - - - - - - - - - - 6 - S237 IYDKQYKS QFEAQKI 8 461 39 - 82 68 - - 53 - 6 4 45 43 25 23 - - 5 2 50 16 S332 TSTNPIAS IFAWTRG 1 9 - - - - - - - - - - - - - - - - - - 7 2 S389 GLPNVQRS DYLNTFE 1 8 - - 4 4 - - - - - - - - - - - - - - - - Y391 PNVQRSDY LNTFEFM 2 43 - - 8 8 - - 27 - - - - - - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S9 SKKISGGS VVEMQGD - - - - - - - - - - - T77 GVKCATIT PDEKRVE 7.6e-5 - - - - - 7.5e-5 - - - - S94 KLKQMWKS PNGTIRN - - - - - - - - - - - S122 KNIPRLVS GWVKPII - - - - - - - - - - - T157 GKVEITYT PSDGTQK - - - - - - - - - - - S159 VEITYTPS DGTQKVT - - - - - - - - - - - S237 IYDKQYKS QFEAQKI -0.036 - -9e-16 - - - 0.31 0.41 - - 0.043 S332 TSTNPIAS IFAWTRG - - - - - - - - - - - S389 GLPNVQRS DYLNTFE - - - - - - - - - - - Y391 PNVQRSDY LNTFEFM - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S9
T77
S94
S122
T157
S159
S237
S332
S389
Y391
T394
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation CCRCC S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation COAD S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation GBM S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation HNSCC S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation LSCC S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation LUAD S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation OV S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation PDAC S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation UCEC S9 T77 S94 S122 T157 S159 S237 S332 S389 Y391 T394 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S9
T77
S94
S122
T157
S159
S237
S332
S389
Y391
T394
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S9
T77
S94
S122
T157
S159
S237
S332
S389
Y391
T394
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.