Protein: ENSP00000400433
Gene: HNRNPF

LinkedOmicsKB © 2022-2023 Zhang Lab

HNRNPF:
heterogeneous nuclear ribonucleoprotein F

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S23RGLPWSCSVEDVQNF850745-64477216-492864576155----12-
S32EDVQNFLSDCTIHDG110--------64----------
S63EAFVELGSEDDVKMA616023-86------1010108--1035418
S77ALKKDRESMGHRYIE743917---3834----78725449185431669
S104LKHSGPNSADSANDG1058978-8685859-73444018166916187719
S107SGPNSADSANDGFVR451----611----55--144--6-
S161EAFVQFASQELAEKA23313---------1010--------
S187YIEVFKSSQEEVRSY957765-44--18-6742706353496240175918
S193SSQEEVRSYSDPPLK2356-----------------254
Y194SQEEVRSYSDPPLKF166-------------------
Showing 1 to 10 of 17 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S23RGLPWSCSVEDVQNF-3.4e-5-0.89---0.0010.87-1e-7---
S32EDVQNFLSDCTIHDG-----------
S63EAFVELGSEDDVKMA2.4e-5---------2.4e-5
S77ALKKDRESMGHRYIE3.9e-6--3.1e-5--1.4e-30.83-0.097-
S104LKHSGPNSADSANDG7.9e-6--6.4e-10--0.2-0.78--
S107SGPNSADSANDGFVR-----------
S161EAFVQFASQELAEKA-----------
S187YIEVFKSSQEEVRSY1.8e-48----2.2e-132.6e-229.6e-12-2.0e-54.7e-6
S193SSQEEVRSYSDPPLK-----------
Y194SQEEVRSYSDPPLKF-----------
Showing 1 to 10 of 17 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationCCRCCS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationCOADS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationGBMS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationHNSCCS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationLSCCS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationLUADS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationOVS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationPDACS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylationUCECS23S32S63S77S104S107S161S187S193Y194S195S203T215Y246S250Y266S269proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.