CCDC88A: coiled-coil domain containing 88A
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S233 HASSSAQS PCGSPGM 1 90 - - - - - - 90 - - - - - - - - - - - - - S237 SAQSPCGS PGMKRTE 1 72 - - - - - - 72 - - - - - - - - - - - - - S245 PGMKRTES RQHLSVE 3 87 42 - - - - - 36 - 5 4 - - - - - - - - - - S422 LEMAQKQS MDESLHL 1 9 - - - - - - 9 - - - - - - - - - - - - - S426 QKQSMDES LHLGWEL 1 9 - - - - - - 9 - - - - - - - - - - - - - S449 LSEAPQKS LGHEVNE 9 475 17 - 9 8 - - 99 - 12 7 49 46 53 48 15 3 19 7 65 18 S1020 EERMVQSS PPISGED 9 526 41 - 41 39 - - 99 - 40 23 54 49 22 19 14 4 19 9 48 5 S1024 VQSSPPIS GEDNKWE 1 9 - - - - - - 9 - - - - - - - - - - - - - S1134 QLLIQQSS LENENES 1 17 - - - - - - 17 - - - - - - - - - - - - - S1172 LLHERQAS EYESLIS 1 9 - - - - - - 9 - - - - - - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S233 HASSSAQS PCGSPGM - - - - - - - - - - - S237 SAQSPCGS PGMKRTE - - - - - - - - - - - S245 PGMKRTES RQHLSVE - - - - - - - - - - - S422 LEMAQKQS MDESLHL - - - - - - - - - - - S426 QKQSMDES LHLGWEL - - - - - - - - - - - S449 LSEAPQKS LGHEVNE -1.5e-6 - - - - - -1.6e-3 -1.5e-3 - - -0.045 S1020 EERMVQSS PPISGED 7.8e-3 - 4e-7 - - 0.02 0.57 -8.2e-3 - - - S1024 VQSSPPIS GEDNKWE - - - - - - - - - - - S1134 QLLIQQSS LENENES - - - - - - - - - - - S1172 LLHERQAS EYESLIS - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S233
S237
S245
S422
S426
S449
S1020
S1024
S1134
S1172
S1387
S1417
T1421
S1427
S1428
S1439
S1447
S1449
S1462
S1489
S1491
T1506
S1561
S1566
S1571
S1583
S1587
S1590
S1596
S1598
S1603
T1650
S1652
S1653
S1661
S1675
S1678
T1682
S1700
S1702
S1715
S1717
S1718
T1801
S1807
T1819
S1820
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation CCRCC S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation COAD S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation GBM S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation HNSCC S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation LSCC S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation LUAD S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation OV S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation PDAC S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation UCEC S233 S237 S245 S422 S426 S449 S1020 S1024 S1134 S1172 S1387 S1417 T1421 S1427 S1428 S1439 S1447 S1449 S1462 S1489 S1491 T1506 S1561 S1566 S1571 S1583 S1587 S1590 S1596 S1598 S1603 T1650 S1652 S1653 S1661 S1675 S1678 T1682 S1700 S1702 S1715 S1717 S1718 T1801 S1807 T1819 S1820 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S233
S237
S245
S422
S426
S449
S1020
S1024
S1134
S1172
S1387
S1417
T1421
S1427
S1428
S1439
S1447
S1449
S1462
S1489
S1491
T1506
S1561
S1566
S1571
S1583
S1587
S1590
S1596
S1598
S1603
T1650
S1652
S1653
S1661
S1675
S1678
T1682
S1700
S1702
S1715
S1717
S1718
T1801
S1807
T1819
S1820
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
Loading, please wait
all sites
S233
S237
S245
S422
S426
S449
S1020
S1024
S1134
S1172
S1387
S1417
T1421
S1427
S1428
S1439
S1447
S1449
S1462
S1489
S1491
T1506
S1561
S1566
S1571
S1583
S1587
S1590
S1596
S1598
S1603
T1650
S1652
S1653
S1661
S1675
S1678
T1682
S1700
S1702
S1715
S1717
S1718
T1801
S1807
T1819
S1820
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.