Protein: ENSP00000416523
Gene: SEMA4D

LinkedOmicsKB © 2022-2023 Zhang Lab

SEMA4D:
semaphorin 4D

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S788DFCDREQSLKETLVE101230122-9976201698-1035910899837771105449518
S798ETLVEPGSFSQQNGE6260--2416--44-261454----15108418
S800LVEPGSFSQQNGEHP4449---------101045--42--
T817ALDTGYETEQDTITS225--88--9-------------
T828TITSKVPTDREDSQR19------9-------------
S833VPTDREDSQRIDDLS1083547-4327171971-79469890464527748188918
S840SQRIDDLSARDKPFD332------------4472--69
S857CELKFADSDADGD__10119257-10380656055-10258103949690186103434118
Showing 1 to 8 of 8 rows

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S788DFCDREQSLKETLVE-0.74--5e-180.18-0.334.6e-172.2e-7--3.6e-5-3.2e-5
S798ETLVEPGSFSQQNGE-0.074--0.52---0.27-----0.18
S800LVEPGSFSQQNGEHP-----------
T817ALDTGYETEQDTITS-----------
T828TITSKVPTDREDSQR-----------
S833VPTDREDSQRIDDLS3.4e-5-6.8e-3--1.1e-35.9e-110.59-0.84-0.002
S840SQRIDDLSARDKPFD-----------
S857CELKFADSDADGD__-3.3e-11--7.1e-29-0.33--0.280.044-0.062--2.5e-70.51
Showing 1 to 8 of 8 rows

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS788S798S800T817T828S833S840S857proteinRNASCNVmethylationCCRCCS788S798S800T817T828S833S840S857proteinRNASCNVmethylationCOADS788S798S800T817T828S833S840S857proteinRNASCNVmethylationGBMS788S798S800T817T828S833S840S857proteinRNASCNVmethylationHNSCCS788S798S800T817T828S833S840S857proteinRNASCNVmethylationLSCCS788S798S800T817T828S833S840S857proteinRNASCNVmethylationLUADS788S798S800T817T828S833S840S857proteinRNASCNVmethylationOVS788S798S800T817T828S833S840S857proteinRNASCNVmethylationPDACS788S798S800T817T828S833S840S857proteinRNASCNVmethylationUCECS788S798S800T817T828S833S840S857proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.