RXRA: retinoid X receptor alpha
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1by4 chain A
1by4 chain B
1by4 chain C
1by4 chain D
1dsz chain B
1fby chain A
1fby chain B
1fm6 chain A
1fm6 chain U
1fm9 chain A
1g1u chain A
1g1u chain B
1g1u chain C
1g1u chain D
1g5y chain A
1g5y chain B
1g5y chain C
1g5y chain D
1k74 chain A
1mv9 chain A
1mvc chain A
1mzn chain A
1mzn chain C
1mzn chain E
1mzn chain G
1r0n chain A
1rdt chain A
1rxr chain A
1xls chain A
1xls chain B
1xls chain C
1xls chain D
1xv9 chain A
1xv9 chain C
1xvp chain A
1xvp chain C
1ynw chain B
2acl chain A
2acl chain C
2acl chain E
2acl chain G
2nll chain A
2p1t chain A
2p1u chain A
2p1v chain A
2zxz chain A
2zy0 chain A
2zy0 chain C
3dzu chain A
3dzy chain A
3e00 chain A
3e94 chain A
3fal chain A
3fal chain C
3fc6 chain A
3fc6 chain C
3fug chain A
3h0a chain A
3kwy chain A
3nsp chain A
3nsp chain B
3nsq chain A
3nsq chain B
3oap chain A
3ozj chain A
3ozj chain C
3pcu chain A
3r29 chain A
3r29 chain B
3r2a chain A
3r2a chain B
3r2a chain C
3r2a chain D
3r5m chain A
3r5m chain C
3uvv chain B
4cn2 chain C
4cn2 chain D
4cn3 chain A
4cn3 chain B
4cn3 chain C
4cn3 chain D
4cn5 chain A
4cn5 chain B
4cn7 chain A
4cn7 chain B
4cn7 chain E
4cn7 chain F
4j5w chain C
4j5w chain D
4j5x chain C
4j5x chain D
4k4j chain A
4k6i chain A
4m8e chain A
4m8h chain A
4n5g chain A
4n5g chain B
4n5g chain C
4n5g chain D
4n8r chain A
4n8r chain B
4n8r chain C
4n8r chain D
4nqa chain A
4nqa chain H
4oc7 chain A
4poh chain A
4poj chain A
4pp3 chain A
4pp5 chain A
4rfw chain A
4rmc chain A
4rmd chain A
4rme chain A
4zo1 chain B
4zsh chain A
5ec9 chain A
5ji0 chain A
5lyq chain A
5mj5 chain A
5mk4 chain A
5mk4 chain C
5mkj chain A
5mku chain A
5mmw chain A
5tbp chain A
5tbp chain B
5tbp chain C
5tbp chain D
5uan chain A
5z12 chain B
5z12 chain C
5zqu chain A
5zqu chain B
5zqu chain C
5zqu chain D
6a5y chain D
6a5z chain D
6a5z chain L
6a60 chain D
6fbq chain A
6fbq chain B
6fbr chain A
6fbr chain B
6hn6 chain A
6jno chain A
6jno chain B
6jno chain C
6jno chain D
6jnr chain A
6jnr chain B
6l6k chain A
6lb4 chain A
6lb5 chain A
6lb5 chain C
6lb6 chain A
6sjm chain A
6sti chain A
6xwg chain C
6xwh chain C
6xwh chain D
7a77 chain A
7b88 chain A
7b9o chain A
7bk4 chain A
7bk4 chain C
7cfo chain A
7cfo chain B
7cfo chain C
7cfo chain D
7nke chain A
7nke chain C
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T13 FLPLDFST QVNSSLT 2 33 25 - 4 4 - - - - - - - - - - - - - - - - T20 TQVNSSLT SPTGRGS 1 9 - - - - - - - - - - - - - - - - - - - 9 S21 QVNSSLTS PTGRGSM 9 423 7 - - - 40 40 90 - 17 10 20 19 4 4 19 5 75 33 29 11 S259 ANMGLNPS SPNDPVT 3 27 9 - 5 4 - - - - 5 4 - - - - - - - - - - S260 NMGLNPSS PNDPVTN 5 202 - - 4 4 - - 27 - 34 19 - - - - - - 25 11 60 18 T266 SSPNDPVT NICQAAD 2 17 - - - - - - - - 6 3 - - 4 4 - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T13 FLPLDFST QVNSSLT - - - - - - - - - - - T20 TQVNSSLT SPTGRGS - - - - - - - - - - - S21 QVNSSLTS PTGRGSM -2.3e-17 - - -2.6e-8 - - -2.7e-8 - - -1.5e-6 -0.31 S259 ANMGLNPS SPNDPVT - - - - - - - - - - - S260 NMGLNPSS PNDPVTN -1.1e-5 - - - - -2.9e-5 - - - 0.59 -6.9e-5 T266 SSPNDPVT NICQAAD - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
T13
T20
S21
S259
S260
T266
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA T13 S21 S259 S260 T266 protein RNA SCNV methylation CCRCC T13 S21 S259 S260 T266 protein RNA SCNV methylation COAD T13 S21 S259 S260 T266 protein RNA SCNV methylation GBM T13 S21 S259 S260 T266 protein RNA SCNV methylation HNSCC T13 S21 S259 S260 T266 protein RNA SCNV methylation LSCC T13 S21 S259 S260 T266 protein RNA SCNV methylation LUAD T13 S21 S259 S260 T266 protein RNA SCNV methylation OV T13 S21 S259 S260 T266 protein RNA SCNV methylation PDAC T13 S21 S259 S260 T266 protein RNA SCNV methylation UCEC T13 S21 S259 S260 T266 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
T13
T20
S21
S259
S260
T266
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
T13
T20
S21
S259
S260
T266
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.