Protein: ENSP00000433277
Gene: MS4A1

LinkedOmicsKB © 2022-2023 Zhang Lab

MS4A1:
membrane spanning 4-domains A1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S7_MTTPRNSVNGTFPA846116---2429--4223343265602865923173
T11PRNSVNGTFPAEPMK61359-422223------98368--122
S25KGPIAMQSGPKPLFR18--------------62----
S35KPLFRRMSSLVGPTQ991340-70506975--915383746561831853226-
S36PLFRRMSSLVGPTQS979391-705097100--1166054414154136328122
S225RTCSRPKSNIVLLSA321--------72----6231--
S231KSNIVLLSAEEKKEQ227--------136----62----
T239AEEKKEQTIEIKEEV18--------------62----
S253VVGLTETSSQPKNEE343--------136108----51--
S254VGLTETSSQPKNEED6259--------553115158820540172916
Showing 1 to 10 of 11 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S7_MTTPRNSVNGTFPA0.11---8.9e-4-0.222.5e-30.077-0.36-
T11PRNSVNGTFPAEPMK-0.064---0.064-------
S25KGPIAMQSGPKPLFR-----------
S35KPLFRRMSSLVGPTQ-2.9e-5-0.57-9.6e-6--0.0110.66-2.7e-3-0.11-0.63-
S36PLFRRMSSLVGPTQS-0.82-0.57-1.0e-6--0.641.1e-3-0.510.5-
S225RTCSRPKSNIVLLSA-----------
S231KSNIVLLSAEEKKEQ-----------
T239AEEKKEQTIEIKEEV-----------
S253VVGLTETSSQPKNEE-----------
S254VGLTETSSQPKNEED0.22----0.33----0.20.015
Showing 1 to 10 of 11 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationCCRCCS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationCOADS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationGBMS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationHNSCCS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationLSCCS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationLUADS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationOVS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationPDACS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylationUCECS7T11S25S35S36S225S231T239S253S254S295proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.