Protein: ENSP00000451291
Gene: HNRNPC

LinkedOmicsKB © 2022-2023 Zhang Lab

HNRNPC:
heterogeneous nuclear ribonucleoprotein C

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S100GKAGVKRSAAEMYGS634914-1212--36-231554467265------
S113GSVTEHPSPSPLLSS728731-54--51-68422420181662----
S115VTEHPSPSPLLSSSF862847-2120--90-1086259525448295--267
Y137RDYYDRMYSYPARVP3104----252036-----------167
S138DYYDRMYSYPARVPP6169--44231336-------42983252
S162PSKRQRVSGNTSRRG10108970-24249710081-633710394837768146327559
T165RQRVSGNTSRRGKSG136------36-------------
S166QRVSGNTSRRGKSGF967723-43--76-52887870665211100424413
S233VEMKNDKSEEEQSSS101553122-103809710099-10862108991101018319105449518
S238DKSEEEQSSSSVKKD1047045-171681045-1066358403517730153216
Showing 1 to 10 of 18 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S100GKAGVKRSAAEMYGS-0.88-----0.95-0.830.98---
S113GSVTEHPSPSPLLSS-7.2e-3-----2.2e-4-0.92----
S115VTEHPSPSPLLSSSF-1.0e-5--0.97---1.1e-7-0.025-0.22---
Y137RDYYDRMYSYPARVP0.87--0.87-------
S138DYYDRMYSYPARVPP-0.11---0.11-------
S162PSKRQRVSGNTSRRG7.7e-4--0.712.8e-5--0.022-0.10.0190.0211.4e-5-
T165RQRVSGNTSRRGKSG-----------
S166QRVSGNTSRRGKSGF-1.3e-5-----0.45-9.3e-54.4e-3-7.4e-5-4.5e-8
S233VEMKNDKSEEEQSSS0.13--6e-161.3e-20-0.671.7e-90.171.5e-4-6.7e-7-4.7e-4
S238DKSEEEQSSSSVKKD1.9e-12-----3.7e-122.4e-9--0.710.12
Showing 1 to 10 of 18 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationCCRCCS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationCOADS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationGBMS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationHNSCCS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationLSCCS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationLUADS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationOVS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationPDACS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylationUCECS100S113S115Y137S138S162T165S166S233S238S239S240S241T247S253S260S299S306proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.