PRIM2: DNA primase subunit 2
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
3l9q chain A
3l9q chain B
3q36 chain A
3q36 chain B
4bpu chain B
4bpu chain D
4bpw chain B
4bpw chain D
4bpx chain B
4bpx chain D
4rr2 chain B
4rr2 chain D
5dqo chain A
5dqo chain B
5dqo chain C
5dqo chain D
5exr chain B
5exr chain F
5f0q chain A
5f0q chain B
5f0s chain A
5f0s chain B
5i7m chain A
5i7m chain B
6dhw chain A
6dhw chain B
7opl chain D
7u5c chain B
8d0b chain E
8d0k chain E
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S404 KLQSYKIS PGGISQI 2 24 - - 4 4 - - - - 11 5 - - - - - - - - - - T470 KEPIQPET PQPKPSV 4 228 9 - - - - - - - - - 35 33 36 32 - - - - 67 16
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S404 KLQSYKIS PGGISQI - - - - - - - - - - - T470 KEPIQPET PQPKPSV 2.2e-15 - - - - - 1.8e-5 1.2e-9 - - 7.7e-4
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S404
T470
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S404 T470 protein RNA SCNV methylation CCRCC S404 T470 protein RNA SCNV methylation COAD S404 T470 protein RNA SCNV methylation GBM S404 T470 protein RNA SCNV methylation HNSCC S404 T470 protein RNA SCNV methylation LSCC S404 T470 protein RNA SCNV methylation LUAD S404 T470 protein RNA SCNV methylation OV S404 T470 protein RNA SCNV methylation PDAC S404 T470 protein RNA SCNV methylation UCEC S404 T470 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S404
T470
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S404
T470
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.