Protein: ENSP00000484525
Gene: CTDP1

LinkedOmicsKB © 2022-2023 Zhang Lab

CTDP1:
CTD phosphatase subunit 1

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S70ASQSRVASGGCVRPA19-------------------9
S273LFSHRILSRDECIDP18------------44------
T391LNGSEAATPRDSPRP341--------63----71--186
S395EAATPRDSPRPGKPD1064123-88646218-26158881454118635167215
S416PAQAPTSSQELAGAP750256-2019----9955989097--322816
S456DLDFDLSSDSESSSE728221-17161520--45272020----1045116
S458DFDLSSDSESSSESE433----45--5454------6-
S460DLSSDSESSSESEGT381--------631413------432
S474TKSSSSASDGESEGK868736---747881---7468807237102582816
S674ILTRLVLSPDAPDRA615717-----36---3431--7284711
Showing 1 to 10 of 24 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S70ASQSRVASGGCVRPA-----------
S273LFSHRILSRDECIDP-----------
T391LNGSEAATPRDSPRP-----------
S395EAATPRDSPRPGKPD0.26--0.29--0.460.0230.21--7.6e-54.4e-3
S416PAQAPTSSQELAGAP0.83-0.009--0.35-0.53----0.013
S456DLDFDLSSDSESSSE7.3e-4----0.0191.6e-4----0.79
S458DFDLSSDSESSSESE-----------
S460DLSSDSESSSESEGT-----------
S474TKSSSSASDGESEGK0.015--0.07--0.0444.6e-30.12--5.6e-3
S674ILTRLVLSPDAPDRA-0.03------0.03----
Showing 1 to 10 of 24 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationCCRCCS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationCOADS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationGBMS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationHNSCCS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationLSCCS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationLUADS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationOVS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationPDACS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylationUCECS273T391S395S416S456S458S460S474S674S740T753S839S841T843S856S869S872S904S905S929S936S943S944proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.