Gene: CTNNB1

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
catenin beta 1
Ensembl
ENSG00000168036.18
Summary
The protein encoded by this gene is part of a complex of proteins that constitute adherens junctions (AJs). AJs are necessary for the creation and maintenance of epithelial cell layers by regulating cell growth and adhesion between cells. The encoded protein also anchors the actin cytoskeleton and may be responsible for transmitting the contact inhibition signal that causes cells to stop dividing once the epithelial sheet is complete. Finally, this protein binds to the product of the APC gene, which is mutated in adenomatous polyposis of the colon. Mutations in this gene are a cause of colorectal cancer (CRC), pilomatrixoma (PTR), medulloblastoma (MDB), and ovarian cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2016]
Annotation
Cancer driver (Oncogene)

Protein product

  • ENST00000349496.11 Primary ENSP00000344456.5 (24 phosphosites)
  • ENST00000645320.1
  • ENST00000441708.2
  • ENST00000396185.8
  • ENST00000433400.6
  • ENST00000643297.1
  • ENST00000643541.1
  • ENST00000396183.7
  • ENST00000643031.1
  • ENST00000645210.1
  • ENST00000642992.1
  • ENST00000644867.1
  • ENST00000643977.1
  • ENST00000642315.1
  • ENST00000643992.1
  • ENST00000647390.1
  • ENST00000645982.1
  • ENST00000642248.1
  • ENST00000450969.6
  • ENST00000431914.6
  • ENST00000646725.1
  • ENST00000642426.1
  • ENST00000405570.6
  • ENST00000646369.1
  • ENST00000645276.1
  • ENST00000644873.1
  • ENST00000644524.1
  • ENST00000644678.1
  • ENST00000645900.1
  • ENST00000646381.1
  • ENST00000642836.1
  • ENST00000645493.1
  • ENST00000453024.6
  • ENST00000646174.1
  • ENST00000646116.1
  • ENST00000647264.1
  • ENST00000642886.1
  • ENST00000642986.1
  • ENST00000644138.1
Phosphosites on the primary protein product

Tumor and normal comparison

Signed p-values
Data type Meta P BRCA CCRCC COAD GBM HNSCC LSCC LUAD OV PDAC UCEC

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
Protein expression

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of CTNNB1 with phenotypes and mutations

Signed p-values
Phenotype Meta P BRCA CCRCC COAD GBM HNSCC LSCC LUAD OV PDAC UCEC

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of CTNNB1

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of CTNNB1 and the protein abundance of other genes

Signed p-values
Gene Meta P BRCA CCRCC COAD GBM HNSCC LSCC LUAD OV PDAC UCEC

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.