Basic information

Full name
ribosomal protein S3
Ensembl
ENSG00000149273.15
Summary
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit, where it forms part of the domain where translation is initiated. The protein belongs to the S3P family of ribosomal proteins. Studies of the mouse and rat proteins have demonstrated that the protein has an extraribosomal role as an endonuclease involved in the repair of UV-induced DNA damage. The protein appears to be located in both the cytoplasm and nucleus but not in the nucleolus. Higher levels of expression of this gene in colon adenocarcinomas and adenomatous polyps compared to adjacent normal colonic mucosa have been observed. This gene is co-transcribed with the small nucleolar RNA genes U15A and U15B, which are located in its first and fifth introns, respectively. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]
Annotation
Essential genes

Protein product

Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA1.5e-8-3.1e-27---8.7e-83e-71.1e-5--0.02-
protein7.5e-53-0.236.7e-17-4.3e-122.1e-351.1e-35--2.9e-118.3e-9

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC11.51212.51313.51414.51515.51616.51717.518log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADPDACUCEC2727.52828.52929.53030.531log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214160-2-4-6-8-10-12-14-16Pan-cancer024681012141618202224260-2-4-6-8-10-12-14-16-18-20-22-24-26proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of RPS3 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_MYC_TARGETS_V24.4e-279.5e-70.0420.0037.3e-63.2e-31.8e-61.2e-6-0.0192.5e-3
PROGENy: PI3K7.1e-207.4e-45.7e-33.8e-51.5e-51.5e-70.327.5e-3-0.0630.044
HALLMARK_UNFOLDED_PROTEIN_RESPONSE1.6e-182.9e-43.8e-40.0984.9e-60.010.0858.2e-8-0.220.04
HALLMARK_G2M_CHECKPOINT2.6e-182.8e-43.3e-30.0332.7e-40.325.7e-51.8e-4-9.2e-30.014
HALLMARK_E2F_TARGETS4.6e-176.8e-50.0220.0431.9e-4-0.912.5e-63.5e-4-0.0120.013
KINASE-PSP_CDK14.6e-172.4e-70.563.0e-43.8e-50.347.7e-32.4e-4-0.0030.15
HALLMARK_MTORC1_SIGNALING3.1e-161.4e-47.8e-30.0897.6e-49.1e-39.2e-64.1e-4-0.830.029
KINASE-PSP_CDK23.8e-161.6e-44.6e-38.2e-30.0290.90.0161.5e-4-7.8e-49.2e-4
KINASE-PSP_CK2A1/CSNK2A11e-150.214.8e-7-0.672.8e-50.0483.4e-68.9e-5-0.070.096
HALLMARK_MYC_TARGETS_V14.4e-151.4e-45.8e-30.435.7e-40.473.1e-59.5e-4-5.3e-30.083
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of RPS3

BRCA0.270.030.51proteinmRNASCNVmethylationCCRCC0.08-0.06-0.160.170.21-0.09proteinmRNASCNVmethylationCOAD-0.100.11-0.05proteinmRNASCNVmethylationGBM0.140.11-0.150.060.15-0.03proteinmRNASCNVmethylationHNSCC0.250.08-0.000.110.670.29proteinmRNASCNVmethylationLSCC0.240.13-0.04-0.050.380.08proteinmRNASCNVmethylationLUAD0.280.100.020.010.400.02proteinmRNASCNVmethylationOV0.21proteinmRNASCNVmethylationPDAC-0.100.06-0.17-0.160.270.28proteinmRNASCNVmethylationUCEC0.17-0.010.050.150.020.03proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of RPS3 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.