RPS3: ribosomal protein S3
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1wh9 chain A
4ug0 chain SD
4v6x chain AD
5a2q chain D
5aj0 chain BD
5flx chain D
5lks chain SD
5oa3 chain D
5t2c chain Aq
5vyc chain D1
5vyc chain D2
5vyc chain D3
5vyc chain D4
5vyc chain D5
5vyc chain D6
6fec chain g
6g51 chain D
6g53 chain D
6g5h chain D
6g5i chain D
6ip5 chain 2p
6ip6 chain 2p
6ip8 chain 2p
6ole chain SD
6olf chain SD
6olg chain BD
6oli chain SD
6olz chain BD
6om0 chain SD
6om7 chain SD
6qzp chain SD
6xa1 chain SD
6y0g chain SD
6y2l chain SD
6y57 chain SD
6ybs chain Z
6z6l chain SD
6z6m chain SD
6z6n chain SD
6zlw chain F
6zm7 chain SD
6zme chain SD
6zmi chain SD
6zmo chain SD
6zmt chain F
6zmw chain Z
6zn5 chain F
6zoj chain D
6zol chain D
6zon chain b
6zp4 chain b
6zuo chain D
6zv6 chain D
6zvh chain D
6zvj chain b
6zxd chain D
6zxe chain D
6zxf chain D
6zxg chain D
6zxh chain D
7a09 chain b
7k5i chain D
7qp6 chain Z
7qp7 chain Z
7tql chain F
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S104 CAIAQAES LRYKLLG 5 144 - - 41 30 - - - - 6 4 - - 27 24 - - 4 2 6 - Y120 LAVRRACY GVLRFIM 2 26 - - - - - - - - 5 4 - - - - - - - - 12 5 S209 KPLPDHVS IVEPKDE 1 5 - - - - - - - - - - - - - - - - 4 1 - - T220 PKDEILPT TPISEQK 6 260 - - 37 36 6 11 - - 57 32 14 13 12 12 - - 21 9 - - T221 KDEILPTT PISEQKG 8 1245 - - 82 70 97 100 99 - 102 59 94 85 101 94 - - 105 44 95 18 S224 ILPTTPIS EQKGGKP 1 50 - - - - - - - - - - - - - - - - - - 34 16 T242 AMPQPVPT A______ 8 922 - - 64 53 27 18 80 - 62 36 88 80 97 88 - - 87 37 87 18
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S104 CAIAQAES LRYKLLG -0.59 - -0.03 - - - - 0.16 - - - Y120 LAVRRACY GVLRFIM - - - - - - - - - - - S209 KPLPDHVS IVEPKDE - - - - - - - - - - - T220 PKDEILPT TPISEQK 0.21 - -0.49 - - 0.015 - - - - - T221 KDEILPTT PISEQKG 3.4e-32 - -0.11 1.9e-22 - 8.9e-7 6.2e-23 2e-26 - -2.6e-9 2.8e-4 S224 ILPTTPIS EQKGGKP 0.044 - - - - - - - - - 0.044 T242 AMPQPVPT A______ 1.3e-7 - 0.19 -0.95 - -0.24 3.8e-17 1.6e-17 - -3.5e-6 0.11
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S104
Y120
S209
T220
T221
S224
T242
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation CCRCC S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation COAD S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation GBM S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation HNSCC S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation LSCC S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation LUAD S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation OV S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation PDAC S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation UCEC S104 Y120 S209 T220 T221 S224 T242 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S104
Y120
S209
T220
T221
S224
T242
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S104
Y120
S209
T220
T221
S224
T242
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.