Protein: ENSP00000317123
Gene: SNRNP200

LinkedOmicsKB © 2022-2023 Zhang Lab

SNRNP200:
small nuclear ribonucleoprotein U5 subunit 200

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S8MADVTARSLQYEYKA226----------5597------
S17QYEYKANSNLVLQAD623553-----18-524441----524718
S26LVLQADRSLIDRTRR974636-5045--54-71386862106976235154615
S207GVNVQFESDEEEGDE37759-------6354--------
S225GEVREEASDDDMEGD101505121-99769710099-1086210899106978319100417218
S241AVVRCTLSANLVASG415514-----9---39353127------
S247LSANLVASGELMSSK3316---------5587------
T389VRQSRMDTDLETMDL325------9-----44----62
S434RCQLPDGSFRRQRKG224--88--------44------
S457LKPKPFGSEEQLLPV849217-4240--18-271745427470--1585918
Showing 1 to 10 of 17 rows
1025
rows per page

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S8MADVTARSLQYEYKA-----------
S17QYEYKANSNLVLQAD5.4e-4-----5.5e-8----0.59
S26LVLQADRSLIDRTRR3.7e-17-7.6e-6--3.3e-90.0465.1e-12--0.0171.9e-4
S207GVNVQFESDEEEGDE-----------
S225GEVREEASDDDMEGD1.3e-22--6.4e-76.3e-14-0.0535.5e-186.1e-20-0.616.3e-50.053
S241AVVRCTLSANLVASG-8.7e-23------8.2e-13-1.6e-11---
S247LSANLVASGELMSSK-----------
T389VRQSRMDTDLETMDL-----------
S434RCQLPDGSFRRQRKG-----------
S457LKPKPFGSEEQLLPV2.9e-11--0.53--0.28.5e-185e-14---0.058
Showing 1 to 10 of 17 rows
1025
rows per page

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationCCRCCS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationCOADS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationGBMS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationHNSCCS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationLSCCS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationLUADS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationOVS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationPDACS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylationUCECS8S17S26S207S225S241S247T389S434S457S835T1428T2000S2002T2131S2133S2135proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.