RPL5: ribosomal protein L5
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
4ug0 chain LD
4v6x chain CD
5aj0 chain AD
5lks chain LD
5t2c chain G
6ip5 chain 1G
6ip6 chain 1G
6ip8 chain 1G
6lqm chain r
6lsr chain r
6lss chain r
6lu8 chain r
6ole chain F
6olf chain F
6olg chain AD
6oli chain F
6olz chain AD
6om0 chain F
6om7 chain F
6qzp chain LD
6w6l chain F
6xa1 chain LD
6y0g chain LD
6y2l chain LD
6y57 chain LD
6y6x chain LD
6z6l chain LD
6z6m chain LD
6z6n chain LD
6zm7 chain LD
6zme chain LD
6zmi chain LD
6zmo chain LD
7bhp chain LD
7f5s chain LD
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
Y79 DMIVCAAY AHELPKY 1 18 - - - - - - 18 - - - - - - - - - - - - - S185 KRFPGYDS ESKEFNA 8 740 75 - 28 27 - - 28 - 82 44 73 66 79 73 - - 81 37 35 12 S187 FPGYDSES KEFNAEV 1 7 - - - - - - - - - - - - - - - - - - 5 2 T232 QYIKNSVT PDMMEEM 2 40 - - - - - - - - - - 9 9 - - - - - - 11 11
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Y79 DMIVCAAY AHELPKY - - - - - - - - - - - S185 KRFPGYDS ESKEFNA 1.8e-7 - 2.2e-4 - - 6.9e-3 9e-19 1.7e-3 - -4e-10 0.51 S187 FPGYDSES KEFNAEV - - - - - - - - - - - T232 QYIKNSVT PDMMEEM - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
Y79
S185
S187
T232
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA Y79 S185 S187 T232 protein RNA SCNV methylation CCRCC Y79 S185 S187 T232 protein RNA SCNV methylation COAD Y79 S185 S187 T232 protein RNA SCNV methylation GBM Y79 S185 S187 T232 protein RNA SCNV methylation HNSCC Y79 S185 S187 T232 protein RNA SCNV methylation LSCC Y79 S185 S187 T232 protein RNA SCNV methylation LUAD Y79 S185 S187 T232 protein RNA SCNV methylation OV Y79 S185 S187 T232 protein RNA SCNV methylation PDAC Y79 S185 S187 T232 protein RNA SCNV methylation UCEC Y79 S185 S187 T232 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
Y79
S185
S187
T232
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
Y79
S185
S187
T232
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.