PTPN1: protein tyrosine phosphatase non-receptor type 1
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1a5y chain A
1aax chain A
1bzc chain A
1bzh chain A
1bzj chain A
1c83 chain A
1c84 chain A
1c85 chain A
1c86 chain A
1c87 chain A
1c88 chain A
1ecv chain A
1een chain A
1eeo chain A
1g1f chain A
1g1g chain A
1g1h chain A
1g7f chain A
1g7g chain A
1gfy chain A
1i57 chain A
1jf7 chain A
1jf7 chain B
1kak chain A
1kav chain A
1l8g chain A
1lqf chain A
1lqf chain B
1lqf chain C
1lqf chain D
1nl9 chain A
1nny chain A
1no6 chain A
1nwe chain A
1nwl chain A
1nz7 chain A
1oem chain X
1oeo chain X
1oes chain A
1oet chain A
1oeu chain A
1oev chain A
1ony chain A
1onz chain A
1pa1 chain A
1ph0 chain A
1ptt chain A
1ptu chain A
1ptv chain A
1pty chain A
1pxh chain A
1pyn chain A
1q1m chain A
1q6j chain A
1q6m chain A
1q6n chain A
1q6n chain B
1q6p chain A
1q6p chain B
1q6s chain A
1q6s chain B
1q6t chain A
1q6t chain B
1qxk chain A
1sug chain A
1t48 chain A
1t49 chain A
1t4j chain A
1wax chain A
1xbo chain A
2azr chain A
2b07 chain A
2b4s chain A
2b4s chain C
2bgd chain A
2bge chain A
2cm2 chain A
2cm3 chain A
2cm3 chain B
2cm7 chain A
2cm8 chain A
2cma chain A
2cmb chain A
2cmc chain A
2cne chain A
2cnf chain A
2cng chain A
2cnh chain A
2cni chain A
2f6f chain A
2f6t chain A
2f6v chain A
2f6w chain A
2f6y chain A
2f6z chain A
2f70 chain A
2f71 chain A
2fjm chain A
2fjm chain B
2fjn chain A
2fjn chain B
2h4g chain A
2h4k chain A
2hb1 chain A
2hnp chain A
2hnq chain A
2nt7 chain A
2nta chain A
2qbp chain A
2qbq chain A
2qbr chain A
2qbs chain A
2veu chain A
2vev chain A
2vew chain A
2vex chain A
2vey chain A
2zmm chain A
2zn7 chain A
3a5j chain A
3a5k chain A
3cwe chain A
3d9c chain A
3eax chain A
3eb1 chain A
3eu0 chain A
3i7z chain A
3i80 chain A
3qkp chain A
3qkq chain A
3sme chain A
3zmp chain A
3zmp chain B
3zmq chain A
3zv2 chain A
4bjo chain A
4bjo chain B
4i8n chain A
4qah chain A
4qap chain A
4qbe chain A
4qbw chain A
4y14 chain A
4y14 chain B
4zrt chain A
5k9v chain A
5k9w chain A
5ka0 chain A
5ka1 chain A
5ka2 chain A
5ka3 chain A
5ka4 chain A
5ka7 chain A
5ka8 chain A
5ka9 chain A
5kaa chain A
5kab chain A
5kac chain A
5kad chain A
5kad chain B
5qde chain A
5qdf chain A
5qdg chain A
5qdh chain A
5qdi chain A
5qdj chain A
5qdk chain A
5qdl chain A
5qdm chain A
5qdn chain A
5qdo chain A
5qdp chain A
5qdq chain A
5qdr chain A
5qds chain A
5qdt chain A
5qdu chain A
5qdv chain A
5qdw chain A
5qdx chain A
5qdy chain A
5qdz chain A
5qe0 chain A
5qe1 chain A
5qe2 chain A
5qe3 chain A
5qe4 chain A
5qe5 chain A
5qe6 chain A
5qe7 chain A
5qe8 chain A
5qe9 chain A
5qea chain A
5qeb chain A
5qec chain A
5qed chain A
5qee chain A
5qef chain A
5qeg chain A
5qeh chain A
5qei chain A
5qej chain A
5qek chain A
5qel chain A
5qem chain A
5qen chain A
5qeo chain A
5qep chain A
5qeq chain A
5qer chain A
5qes chain A
5qet chain A
5qeu chain A
5qev chain A
5qew chain A
5qex chain A
5qey chain A
5qez chain A
5qf0 chain A
5qf1 chain A
5qf2 chain A
5qf3 chain A
5qf4 chain A
5qf5 chain A
5qf6 chain A
5qf7 chain A
5qf8 chain A
5qf9 chain A
5qfa chain A
5qfb chain A
5qfc chain A
5qfd chain A
5qfe chain A
5qff chain A
5qfg chain A
5qfh chain A
5qfi chain A
5qfj chain A
5qfk chain A
5qfl chain A
5qfm chain A
5qfn chain A
5qfo chain A
5qfp chain A
5qfq chain A
5qfr chain A
5qfs chain A
5qft chain A
5qfu chain A
5qfv chain A
5qfw chain A
5qfx chain A
5qfy chain A
5qfz chain A
5qg0 chain A
5qg1 chain A
5qg2 chain A
5qg3 chain A
5qg4 chain A
5qg5 chain A
5qg6 chain A
5qg7 chain A
5qg8 chain A
5qg9 chain A
5qga chain A
5qgb chain A
5qgc chain A
5qgd chain A
5qge chain A
5qgf chain A
5t19 chain A
6b8e chain A
6b8t chain A
6b8x chain A
6b8z chain A
6b90 chain A
6b95 chain A
6bai chain A
6cwu chain A
6cwv chain A
6ntp chain A
6ol4 chain A
6olq chain A
6olv chain A
6omy chain A
6pfw chain A
6pg0 chain A
6pgt chain A
6pha chain A
6phs chain A
6pm8 chain A
6w30 chain A
6xe8 chain A
6xea chain A
6xed chain A
6xee chain A
6xef chain A
6xeg chain A
7ken chain A
7key chain A
7klx chain A
7l0c chain A
7l0h chain A
7lfo chain A
7mkz chain A
7mm1 chain A
7mn7 chain A
7mn9 chain A
7mna chain A
7mnb chain A
7mnc chain A
7mnd chain A
7mne chain A
7mnf chain A
7mou chain A
7mov chain A
7mov chain B
7mow chain A
7rin chain A
8du7 chain A
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S15 EQIDKSGS WAAIYQD 4 139 - - 4 4 - - - - - - 5 4 41 36 - - - - 41 4 Y20 SGSWAAIY QDIRHEA 1 10 - - - - - - - - - - 5 5 - - - - - - - - S50 RNRYRDVS PFDHSRI 10 1187 113 - 58 46 49 41 52 - 102 58 98 89 92 83 75 18 92 40 65 16 S118 NRVMEKGS LKCAQYW 2 114 33 - - - 40 41 - - - - - - - - - - - - - - T143 EDTNLKLT LISEDIK 1 8 - - - - - - - - - - - - 4 4 - - - - - - T224 AGIGRSGT FCLADTC 2 28 - - - - - - - - - - 10 9 5 4 - - - - - - S295 QDQWKELS HEDLEPP 9 1265 122 - 99 76 59 49 99 - 103 58 108 99 106 97 - - 97 38 44 11 T338 HQWVKEET QEDKDCP 3 90 6 - - - - - - - - - 25 23 19 17 - - - - - - S352 PIKEEKGS PLNAAPY 10 1308 122 - 86 74 45 36 99 - 91 53 108 99 96 89 54 14 91 38 95 18 S365 PYGIESMS QDTEVRS 6 187 24 - - - - - 18 - 11 7 54 48 - - - - 8 4 11 2
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S15 EQIDKSGS WAAIYQD 0.54 - - - - - - 0.54 - - - Y20 SGSWAAIY QDIRHEA - - - - - - - - - - - S50 RNRYRDVS PFDHSRI 2.2e-64 - 4.9e-8 9.3e-12 - 1.6e-10 3.8e-12 1.5e-21 0.019 3.7e-10 3.2e-5 S118 NRVMEKGS LKCAQYW 3.7e-16 - - 3.8e-16 - - - - - - - T143 EDTNLKLT LISEDIK - - - - - - - - - - - T224 AGIGRSGT FCLADTC - - - - - - - - - - - S295 QDQWKELS HEDLEPP 2e-23 - 0.11 1.3e-6 - 6.3e-15 5e-16 0.82 - -0.36 2.2e-6 T338 HQWVKEET QEDKDCP 0.26 - - - - - 0.26 - - - - S352 PIKEEKGS PLNAAPY -3.9e-8 - -0.69 -6.7e-8 - -3.1e-3 -0.02 -1.6e-4 -1.6e-4 0.8 4.6e-3 S365 PYGIESMS QDTEVRS -0.61 - - - - - -0.61 - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S15
Y20
S50
S118
T143
T224
S295
T338
S352
S365
S378
S386
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation CCRCC S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation COAD S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation GBM S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation HNSCC S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation LSCC S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation LUAD S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation OV S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation PDAC S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation UCEC S15 Y20 S50 S118 T143 T224 S295 T338 S352 S365 S378 S386 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S15
Y20
S50
S118
T143
T224
S295
T338
S352
S365
S378
S386
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S15
Y20
S50
S118
T143
T224
S295
T338
S352
S365
S378
S386
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.