BRD2: bromodomain containing 2
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1x0j chain A
1x0j chain B
1x0j chain C
2dvq chain A
2dvq chain B
2dvq chain C
2dvr chain A
2dvr chain B
2dvr chain C
2dvs chain A
2dvs chain B
2dvs chain C
2dvv chain A
2e3k chain A
2e3k chain B
2e3k chain C
2e3k chain D
2g4a chain A
2ydw chain A
2ydw chain B
2ydw chain C
2yek chain A
2yek chain B
2yek chain C
3aqa chain A
3aqa chain B
3aqa chain C
3oni chain A
4a9e chain A
4a9e chain B
4a9e chain C
4a9f chain A
4a9f chain B
4a9f chain C
4a9h chain A
4a9h chain B
4a9h chain C
4a9i chain A
4a9i chain B
4a9i chain C
4a9j chain A
4a9j chain B
4a9j chain C
4a9m chain A
4a9m chain B
4a9m chain C
4a9n chain A
4a9n chain B
4a9n chain C
4a9o chain A
4a9o chain B
4a9o chain C
4akn chain A
4akn chain B
4akn chain C
4alg chain A
4alh chain A
4alh chain B
4alh chain C
4j1p chain A
4mr5 chain A
4mr6 chain A
4qeu chain A
4qev chain A
4qew chain A
4uyf chain A
4uyf chain B
4uyf chain C
4uyg chain A
4uyg chain B
4uyg chain C
4uyg chain D
4uyg chain E
4uyg chain F
4uyh chain A
4uyh chain B
4uyh chain C
5bt5 chain A
5dfb chain A
5dfc chain A
5dfd chain A
5dw1 chain A
5dw1 chain B
5dw1 chain C
5dw1 chain D
5ek9 chain A
5ek9 chain B
5hel chain A
5hem chain A
5hem chain B
5hen chain A
5hen chain B
5hen chain C
5hfq chain A
5ibn chain A
5ig6 chain A
5n2l chain A
5n2l chain B
5n2l chain C
5n2l chain D
5o38 chain A
5o39 chain A
5o3a chain A
5o3b chain A
5o3b chain B
5o3b chain C
5o3b chain D
5o3c chain A
5o3d chain A
5o3e chain A
5o3f chain A
5o3g chain A
5o3g chain B
5o3h chain A
5o3i chain A
5s9o chain A
5s9o chain B
5u5s chain A
5u6v chain A
5uew chain A
5uew chain B
5xhe chain A
5xhk chain A
6cui chain A
6db0 chain A
6db0 chain B
6db0 chain C
6dbc chain A
6ddi chain A
6ddi chain B
6ddi chain C
6ddj chain A
6e6j chain A
6e6j chain B
6e6j chain C
6e6j chain D
6e6j chain E
6e6j chain F
6ffe chain A
6fff chain A
6ffg chain A
6i80 chain A
6i80 chain B
6i81 chain A
6jke chain A
6jke chain B
6jke chain C
6k04 chain A
6k05 chain A
6k05 chain B
6k05 chain C
6mo7 chain A
6mo7 chain B
6mo7 chain C
6mo8 chain A
6mo8 chain B
6mo8 chain C
6mo9 chain A
6mo9 chain B
6mo9 chain C
6moa chain A
6ony chain A
6ony chain B
6swo chain AAA
6swp chain AAA
6tq1 chain AAA
6tq1 chain BBB
6tq1 chain CCC
6tq2 chain AAA
6tq2 chain BBB
6tq2 chain CCC
6u61 chain A
6u61 chain B
6u71 chain A
6u8h chain A
6ulq chain A
6ulq chain B
6ulq chain C
6ult chain A
6ult chain B
6ult chain C
6ult chain D
6ult chain E
6ult chain F
6ult chain G
6ult chain H
6viy chain A
6viy chain B
6wwb chain A
6ytm chain A
6ytm chain B
6z7f chain AAA
6z8p chain AAA
6zb0 chain AAA
6zb1 chain AAA
6zb2 chain AAA
7dpn chain A
7dpn chain B
7dpn chain C
7dpo chain A
7env chain A
7env chain B
7env chain C
7enz chain A
7eo5 chain A
7jx7 chain A
7l6d chain A
7l9g chain A
7l9j chain A
7l9k chain A
7l9k chain B
7lak chain A
7npy chain AAA
7npz chain AAA
7nq0 chain AAA
7nq1 chain AAA
7nq2 chain AAA
7nq3 chain AAA
7nq5 chain AAA
7nq7 chain AAA
7nq8 chain A
7nq9 chain AAA
7nqi chain A
7nqj chain A
7oe4 chain AAA
7oe5 chain AAA
7oe6 chain AAA
7oe8 chain A
7oe9 chain A
7oep chain AAA
7oer chain AAA
7oes chain AAA
7oet chain AAA
7ogy chain AAA
7q5o chain A
7wln chain A
7wln chain B
7wln chain C
7wln chain D
7wmq chain A
7wmq chain B
7wmq chain C
7wmq chain D
7wmu chain A
7wn5 chain A
7wn5 chain B
7wna chain A
7wna chain B
7wna chain C
7wna chain D
7wna chain E
7wna chain F
7wni chain A
7wni chain B
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
S37 GKRIRKPS LLYEGFE 9 1120 103 - 75 55 53 46 72 - 91 53 94 86 102 93 - - 105 44 43 5 Y40 IRKPSLLY EGFESPT 6 55 - - - - - - 9 - 7 2 5 5 5 2 - - 9 5 6 - S45 LLYEGFES PTMASVP 3 29 - - - - - - - - 6 3 - - - - - - 8 3 7 2 T47 YEGFESPT MASVPAL 5 141 - - - - - - - - 41 21 15 13 4 4 - - 26 11 6 - S50 FESPTMAS VPALQLT 1 8 - - - - - - - - 5 3 - - - - - - - - - - T57 SVPALQLT PANPPPP 3 38 - - - - - - - - 5 4 - - 8 9 - - - - 9 3 T289 KADTTTPT PTAILAP 6 58 9 - 8 8 3 6 - - - - 5 5 4 4 - - - - 6 - T291 DTTTPTPT AILAPGS 3 27 - - - - - - - - - - 5 5 5 4 - - - - 8 - S298 TAILAPGS PASPPGS 10 1322 122 - 95 72 69 57 54 - 84 50 103 94 110 101 63 15 95 40 83 15 S301 LAPGSPAS PPGSLEP 10 863 95 - 37 36 43 46 63 - 70 40 68 64 57 51 28 5 52 23 71 14
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
S37 GKRIRKPS LLYEGFE 0.042 - 1.4e-10 -4.1e-4 - 0.92 6.3e-3 0.025 - -2.8e-3 - Y40 IRKPSLLY EGFESPT - - - - - - - - - - - S45 LLYEGFES PTMASVP - - - - - - - - - - - T47 YEGFESPT MASVPAL -1.5e-7 - - - - -4.3e-3 - - - -4.6e-6 - S50 FESPTMAS VPALQLT - - - - - - - - - - - T57 SVPALQLT PANPPPP - - - - - - - - - - - T289 KADTTTPT PTAILAP - - - - - - - - - - - T291 DTTTPTPT AILAPGS - - - - - - - - - - - S298 TAILAPGS PASPPGS 0.054 - 0.066 0.24 - -3.3e-9 5.7e-14 4.5e-7 -0.44 -0.15 -0.045 S301 LAPGSPAS PPGSLEP 0.012 - -0.17 0.041 - -9.3e-6 2.3e-9 3.8e-7 - -0.3 0.73
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
S37
Y40
S45
T47
S50
T57
T289
T291
S298
S301
S320
S334
S538
S593
S608
S611
T629
Y631
S633
S639
S643
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation CCRCC S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation COAD S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation GBM S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation HNSCC S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation LSCC S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation LUAD S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation OV S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation PDAC S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation UCEC S37 Y40 S45 T47 S50 T57 T289 T291 S298 S301 S320 S334 S538 S593 S608 S611 T629 Y631 S633 S639 S643 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
S37
Y40
S45
T47
S50
T57
T289
T291
S298
S301
S320
S334
S538
S593
S608
S611
T629
Y631
S633
S639
S643
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
S37
Y40
S45
T47
S50
T57
T289
T291
S298
S301
S320
S334
S538
S593
S608
S611
T629
Y631
S633
S639
S643
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.