Protein: ENSP00000378350
Gene: CDC23

LinkedOmicsKB © 2022-2023 Zhang Lab

CDC23:
cell division cycle 23

Lollipop plot

Phosphosites location and occurrence

Select Y-axis:

* Hover over the dots to see sequence motif and cohorts.

Structure

Phosphosite detection coverage

The frequency of phosphosite detection in the number of cohorts and tumor and normal samples

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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T562QLRNQGETPTTEVPA1094015-2828685799-281871677974449100429518
T564RNQGETPTTEVPAPF218----------5445------
T565NQGETPTTEVPAPFF610417-54----64552824--51--
S576APFFLPASLSANNTP457--168----534498------
S578FFLPASLSANNTPTR926622-1513458-40222423221992--299
T582ASLSANNTPTRRVSP659----5310-5454--51--134
S588NTPTRRVSPLNLSSV10101960-449710099-6941645931278319105449518
T596PLNLSSVTP______101475122-90699710090-108621089997887416105448818
Showing 1 to 8 of 8 rows

Tumor and normal comparison

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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T562QLRNQGETPTTEVPA-0.043-0.14-0.24--6.3e-3-0.5-0.22--0.82-0.44
T564RNQGETPTTEVPAPF-----------
T565NQGETPTTEVPAPFF0.13------0.13---
S576APFFLPASLSANNTP-----------
S578FFLPASLSANNTPTR-1.8e-5-----5.6e-4-0.035-0.061---
T582ASLSANNTPTRRVSP-----------
S588NTPTRRVSPLNLSSV-0.71--0.047--6.4e-30.097-0.138.3e-3-5.8e-80.016
T596PLNLSSVTP______-0.069-0.351.6e-3-0.38-0.32-0.038-0.086-7.3e-120.12
Showing 1 to 8 of 8 rows

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

Phenotype and mutation association

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Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.

Cis-association

BRCAT562T564T565S576S578T582S588T596proteinRNASCNVmethylationCCRCCT562T564T565S576S578T582S588T596proteinRNASCNVmethylationCOADT562T564T565S576S578T582S588T596proteinRNASCNVmethylationGBMT562T564T565S576S578T582S588T596proteinRNASCNVmethylationHNSCCT562T564T565S576S578T582S588T596proteinRNASCNVmethylationLSCCT562T564T565S576S578T582S588T596proteinRNASCNVmethylationLUADT562T564T565S576S578T582S588T596proteinRNASCNVmethylationOVT562T564T565S576S578T582S588T596proteinRNASCNVmethylationPDACT562T564T565S576S578T582S588T596proteinRNASCNVmethylationUCECT562T564T565S576S578T582S588T596proteinRNASCNVmethylation

* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.

Kinase association

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Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.

Phosphatase association

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Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.