RAN: RAN, member RAS oncogene family
Lollipop plot
Phosphosites location and occurrence
Select Y-axis:
Sample number
Cohort number
* Hover over the dots to see sequence motif and cohorts.
Structure
1i2m chain A
1i2m chain C
1ibr chain A
1ibr chain C
1k5d chain A
1k5d chain D
1k5d chain G
1k5d chain J
1k5g chain A
1k5g chain D
1k5g chain G
1k5g chain J
1qbk chain C
1rrp chain A
1rrp chain C
2mmc chain A
2mmg chain A
2n1b chain A
3ch5 chain A
3ea5 chain A
3ea5 chain C
3gj0 chain A
3gj0 chain B
3gj3 chain A
3gj4 chain A
3gj4 chain C
3gj5 chain A
3gj5 chain C
3gj6 chain A
3gj7 chain A
3gj7 chain C
3gj8 chain A
3gj8 chain C
3gjx chain C
3gjx chain F
3nby chain C
3nby chain F
3nbz chain C
3nbz chain F
3nc0 chain C
3nc0 chain F
3nc1 chain C
3zjy chain A
3zjy chain D
3zjy chain F
4c0q chain C
4c0q chain D
4gmx chain A
4gpt chain A
4hat chain A
4hau chain A
4hav chain A
4haw chain A
4hax chain A
4hay chain A
4haz chain A
4hb0 chain A
4hb2 chain A
4hb3 chain A
4hb4 chain A
4ol0 chain A
4wvf chain A
5ciq chain A
5ciq chain B
5cit chain A
5cit chain B
5ciw chain A
5ciw chain B
5cj2 chain A
5cj2 chain B
5cj2 chain C
5cj2 chain D
5cj2 chain E
5cj2 chain F
5cj2 chain G
5cj2 chain H
5cll chain A
5cll chain C
5clq chain A
5clq chain C
5dh9 chain A
5dha chain A
5dhf chain A
5di9 chain A
5dif chain A
5dis chain B
5dlq chain C
5dlq chain D
5fyq chain C
5fyq chain D
5jlj chain A
5uwh chain A
5uwi chain A
5uwj chain A
5uwo chain A
5uwp chain A
5uwq chain A
5uwr chain A
5uws chain A
5uwt chain A
5uwu chain A
5uww chain A
5yro chain A
5yst chain A
5ysu chain A
5ytb chain A
5zpu chain A
6a38 chain A
6a3a chain A
6a3b chain A
6a3c chain A
6a3e chain A
6cit chain A
6kft chain A
6lq9 chain A
6m60 chain A
6m6x chain A
6nif chain A
6q82 chain B
6q84 chain B
6q84 chain E
6tvo chain B
6x2m chain A
6x2o chain A
6x2p chain A
6x2r chain A
6x2s chain A
6x2u chain A
6x2v chain A
6x2w chain A
6x2x chain A
6x2y chain A
6xjp chain A
6xjr chain A
6xjs chain A
6xjt chain A
6xju chain A
7b51 chain B
7cnd chain A
7dbg chain A
7l5e chain A
7mnp chain A
7mnp chain C
7mnq chain A
7mnr chain A
7mns chain A
7mnt chain A
7mnt chain C
7mnu chain A
7mnv chain A
7mnw chain A
7mnw chain C
7mnw chain E
7mnw chain G
7mnx chain A
7mnx chain C
7mnx chain E
7mnx chain G
7mnx chain I
7mnx chain K
7mny chain A
7mny chain C
7mny chain E
7mny chain G
7mny chain I
7mny chain K
7mnz chain A
7mnz chain C
7mnz chain E
7mnz chain G
7mnz chain I
7mnz chain K
7mo0 chain A
7mo0 chain C
7mo1 chain A
7mo2 chain A
7mo2 chain C
7mo3 chain A
7mo3 chain C
7mo4 chain A
7mo4 chain C
7mo5 chain A
Phosphosite detection coverage
The frequency of phosphosite detection in the number of cohorts and tumor and normal samples
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BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
Site
Sequence
Cohorts
Total
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T
N
T32 TFVKRHLT GEFEKKY 5 131 - - 36 19 - - - - 15 9 20 18 5 4 - - 4 1 - - S135 DRKVKAKS IVFHRKK 7 792 105 - 92 69 - - 9 - 62 36 88 81 101 93 - - 39 17 - - S153 YYDISAKS NYNFEKP 4 93 - - - - - - - - 6 4 30 28 5 4 - - - - 11 5 Y155 DISAKSNY NFEKPFL 2 33 13 - - - - - - - - - 10 10 - - - - - - - -
Tumor and normal comparison
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Site
Sequence
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
T32 TFVKRHLT GEFEKKY 2.1e-3 - 5.7e-7 - - - -0.52 - - - - S135 DRKVKAKS IVFHRKK -0.83 - 0.5 - - 1.3e-5 -0.11 -9.9e-15 - 1.8e-6 - S153 YYDISAKS NYNFEKP 9.7e-7 - - - - - 9.7e-7 - - - - Y155 DISAKSNY NFEKPFL - - - - - - - - - - -
* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.
Phenotype and mutation association
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all sites
T32
S135
S153
Y155
all
clinical
pathway
cell type
genomic
mutation
Signed p-values
Phenotype
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots.
Cis-association
BRCA T32 S135 S153 Y155 protein RNA SCNV methylation CCRCC T32 S135 S153 Y155 protein RNA SCNV methylation COAD T32 S135 S153 Y155 protein RNA SCNV methylation GBM T32 S135 S153 Y155 protein RNA SCNV methylation HNSCC T32 S135 S153 Y155 protein RNA SCNV methylation LSCC T32 S135 S153 Y155 protein RNA SCNV methylation LUAD T32 S135 S153 Y155 protein RNA SCNV methylation OV T32 S135 S153 Y155 protein RNA SCNV methylation PDAC T32 S135 S153 Y155 protein RNA SCNV methylation UCEC T32 S135 S153 Y155 protein RNA SCNV methylation
* The circles can be clicked to show the scatter plots. The color and size of the circles correlate with the Spearman correlation coefficients.
Kinase association
Protein
RNA
SCNV
methylation
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all sites
T32
S135
S153
Y155
Signed p-values
Kinase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.
Phosphatase association
Protein
RNA
SCNV
methylation
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all sites
T32
S135
S153
Y155
Signed p-values
Phosphatase
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found
* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots.