Basic information

Phenotype
HALLMARK_ANDROGEN_RESPONSE
Description
Enrichment score representing the response to androgen. The score was calculated using ssGSEA on the RNA data (Z-score transformed coding genes with expression in at least 50% of the samples in a cohort).
Source
http://www.gsea-msigdb.org/gsea/msigdb/cards/HALLMARK_ANDROGEN_RESPONSE.html
Method
Single sample gene set enrichment analysis (ssGSEA) was performed for each cancer type using gene-wise Z-scores of the RNA expression data (RSEM) for the MSigDB Hallmark gene sets v7.0 (PMID: 26771021) via the ssGSEA2.0 R package (PMID: 30563849). RNA data were filtered to coding genes with < 50% 0 expression. (Parameters: sample.norm.type="rank", weight=0.75, statistic="area.under.RES", nperm=1000, min.overlap=10). Pathway activity scores are normalized enrichment scores from ssGSEA.
Genes
Gene association

Number of significant genes with P-value ≤ 10-6 for each cohorts are summarized in bar plots. The scatter plot highlights significant associations diven by protein rather than mRNA abundance.

protein-1000-800-600-400-2000200400600metapBRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC
RNA-1500-1000-5000500100015002000metapBRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC
SCNV-100-90-80-70-60-50-40-30-20-100metapBRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC

Association of protein abundance of genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values for individual cohorts can be clicked to show the data plots. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with HALLMARK_ANDROGEN_RESPONSE to WebGestalt.

Phosphosite association

Number of significant genes with P-value ≤ 10-6 for each cohorts are summarized in the bar plot. The scatter plot highlights significant associations diven by phosphorylation rather than protein abundance.

-600-500-400-300-200-1000100200300metapBRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC
Loading, please wait
Signed p-values
Gene
Protein
Site
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values for individual cohorts can be clicked to show the data plots.

Gene set enrichment analysis

Submit phosphorylation sites and the common logarithm of the p-values of their association with HALLMARK_ANDROGEN_RESPONSE to WebGestalt.