Gene: BRD3

LinkedOmicsKB © 2022-2023 Zhang Lab

Basic information

Full name
bromodomain containing 3
Ensembl
ENSG00000169925.17
Summary
This gene was identified based on its homology to the gene encoding the RING3 protein, a serine/threonine kinase. The gene localizes to 9q34, a region which contains several major histocompatibility complex (MHC) genes. The function of the encoded protein is not known. [provided by RefSeq, Jul 2008]
Annotation
Cancer driver (Oncogene) Protein Kinase

Protein product

Phosphosites on the primary protein product

Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-2.2e-4--2.9e-16--2.5e-5-0.130.6--9.5e-4-
protein-2.3e-3-0.381.6e-5--0.007-0.084-4.7e-40.98-0.083-3.3e-5

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC7.588.599.51010.51111.512log2(RSEM+1)tumornormal
Protein expression
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC2121.52222.52323.52424.52525.52626.5log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC02468101214160-2-4-6-8-10-12-14-16Pan-cancer051015202530350-5-10-15-20-25-30-35proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of BRD3 with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
HALLMARK_WNT_BETA_CATENIN_SIGNALING2.5e-150.426.9e-121.9e-37.2e-40.0140.690.160.0630.177.4e-4
Tumor Purity (WGS)4.2e-14-0.71-6.7e-102.6e-69.7e-60.011-0.560.23
Tumor Purity (ABSOLUTE)9.3e-130.97-0.921.8e-53.2e-75.7e-59.4e-50.180.540.0740.12
HALLMARK_HEDGEHOG_SIGNALING6.5e-7-0.370.0143.1e-30.0240.014-0.630.18-0.781.1e-38.2e-3
chromosomal instability1.0e-60.1-7.7e-51.7e-35.2e-43.3e-73.0e-40.480.240.084-0.24
HALLMARK_SPERMATOGENESIS2.4e-4-0.230.38-0.36.1e-52.8e-64.1e-30.749.4e-3-0.58-0.32
xcell: Hematopoietic stem cell2.9e-4-0.442.2e-160.81-0.18-0.33-0.0720.270.384.4e-32.1e-3
xcell: Cancer associated fibroblast5.6e-40.0853.3e-5-0.89-0.99-0.49-0.470.290.760.084.9e-4
HALLMARK_MITOTIC_SPINDLE5.9e-40.130.20.0166.4e-30.130.19-0.5-0.980.760.59
KINASE-PSP_CDK56.2e-4---0.470.410.037--0.010.15
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of BRD3

BRCA0.610.350.51proteinmRNASCNVmethylationCCRCC0.56-0.060.46-0.110.33-0.20proteinmRNASCNVmethylationCOAD0.360.200.38proteinmRNASCNVmethylationGBM0.68-0.130.16-0.180.40-0.04proteinmRNASCNVmethylationHNSCC0.55-0.030.30-0.050.34-0.12proteinmRNASCNVmethylationLSCC0.66-0.190.45-0.120.60-0.14proteinmRNASCNVmethylationLUAD0.51-0.060.42-0.130.55-0.23proteinmRNASCNVmethylationOV0.540.490.63proteinmRNASCNVmethylationPDAC0.520.010.26-0.240.53-0.06proteinmRNASCNVmethylationUCEC0.46-0.070.11-0.090.24-0.20proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of BRD3 and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.