Basic information

Full name
sonic hedgehog signaling molecule
Ensembl
ENSG00000164690.8
Summary
This gene encodes a protein that is instrumental in patterning the early embryo. It has been implicated as the key inductive signal in patterning of the ventral neural tube, the anterior-posterior limb axis, and the ventral somites. Of three human proteins showing sequence and functional similarity to the sonic hedgehog protein of Drosophila, this protein is the most similar. The protein is made as a precursor that is autocatalytically cleaved; the N-terminal portion is soluble and contains the signalling activity while the C-terminal portion is involved in precursor processing. More importantly, the C-terminal product covalently attaches a cholesterol moiety to the N-terminal product, restricting the N-terminal product to the cell surface and preventing it from freely diffusing throughout the developing embryo. Defects in this protein or in its signalling pathway are a cause of holoprosencephaly (HPE), a disorder in which the developing forebrain fails to correctly separate into right and left hemispheres. HPE is manifested by facial deformities. It is also thought that mutations in this gene or in its signalling pathway may be responsible for VACTERL syndrome, which is characterized by vertebral defects, anal atresia, tracheoesophageal fistula with esophageal atresia, radial and renal dysplasia, cardiac anomalies, and limb abnormalities. Additionally, mutations in a long range enhancer located approximately 1 megabase upstream of this gene disrupt limb patterning and can result in preaxial polydactyly. [provided by RefSeq, Jul 2008]
Annotation
Ligand

Protein product

  • ENST00000297261.7 Primary ENSP00000297261.2 (0 phosphosite)
Phosphosites on the primary protein product
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Tumor and normal comparison

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Signed p-values
Data type
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
RNA-5.6e-14--2e-11---0.11-1.5e-17-5.8e-5-5.2e-5-
protein-4.1e-3---4.1e-3-------

* P-values are from Wilcoxon rank sum test and can be clicked to show the box plots. Positive values mean higher abundance in tumor. BRCA and GBM do not have normal samples.

mRNA expression at gene level
BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC012345678910111213log2(RSEM+1)tumornormal
Protein expression
COADGBMLSCCLUAD1516171819202122232425log2(MS1 intensity)tumornormal

* Mild outlier: filled circle; Extreme outlier: empty circle.

Phenotype and mutation association

Manhattan plot summarizing associations of phenotypes and mutations across all cohorts and omics data types

BRCACCRCCCOADGBMHNSCCLSCCLUADOVPDACUCEC012345678910111213140-1-2-3-4-5-6-7-8-9-10-11-12-13-14Pan-cancer02468101214161820220-2-4-6-8-10-12-14-16-18-20-22proteinRNASCNVclinicalpathwaycell typegenomicmutation-log10 of P-value

* Data points of significant associations above and below the dotted lines can be hovered to show the phenotype.

Associations of the protein abundance of SHH with phenotypes and mutations

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Signed p-values
Phenotype
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
PROGENy: p533.2e-4--0.0390.071-0.941.1e-3---
xcell: T cell CD8+ central memory8.3e-4--0.590.081-0.0070.087---
Clinical: overall_survival1.3e-3---1.3e-3------
cibersort: Myeloid dendritic cell resting0.002--0.0840.2-0.0630.19---
HALLMARK_KRAS_SIGNALING_UP0.003--0.570.095-0.433.6e-3---
HALLMARK_MYOGENESIS3.9e-3--0.0430.13-0.770.05---
cibersort: Monocyte3.9e-3--0.27-0.78-0.0851.3e-3---
KINASE-PSP_Akt1/AKT14.6e-3---0.930.017-0.260.024---
HALLMARK_ESTROGEN_RESPONSE_LATE0.005--0.0380.12--0.830.029---
xcell: T cell CD4+ (non-regulatory)0.005--0.0370.32-0.290.14---
Showing 1 to 10 of 256 rows

* P-values could be from test for Spearman correlation, Wilcoxon rank sum test, Jonckheere-Terpstra trend test or Cox regression depending on the data type. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Cis-association

Associations between omics data of SHH

BRCA-0.07proteinmRNASCNVmethylationCCRCC-0.170.310.07proteinmRNASCNVmethylationCOAD0.200.050.26proteinmRNASCNVmethylationGBM0.49-0.12-0.25-0.210.070.06proteinmRNASCNVmethylationHNSCC-0.190.200.06proteinmRNASCNVmethylationLSCC0.110.17-0.13-0.130.27-0.02proteinmRNASCNVmethylationLUAD0.58-0.58-0.56-0.28-0.040.20proteinmRNASCNVmethylationOV0.19proteinmRNASCNVmethylationPDAC-0.130.41-0.03proteinmRNASCNVmethylationUCEC-0.230.380.08proteinmRNASCNVmethylation

* The numbers are Spearman correlation coefficients and can be clicked to show the scatter plots. The color and size of the circles correlate with the coefficients.

Trans-association

Associations of the protein abundance of SHH and the protein abundance of other genes

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Signed p-values
Gene
Meta P
BRCA
CCRCC
COAD
GBM
HNSCC
LSCC
LUAD
OV
PDAC
UCEC
No matching records found

* P-values are from test for Spearman correlation. P-values for individual cohorts can be clicked to show the data plots. The matrix icons in each row can be clicked to show a heatmap summary of associations across all cohorts and omics. The rows in the table can be expanded to show results from other omics.

Gene set enrichment analysis

Submit genes and the common logarithm of the p-values of their association with to WebGestalt.